VaxPress release 0.9

• Added the preliminary documentation.
• New scoring function: DegScore
• CAI is turned off by default (bicodon replaces the role)
• Fixed plotting errors with small number of activated scoring functions
• --default-off makes all scoring functions inactivated by default
• "Full Scan" now uses all survivors round-robin rather than only the top ranker.
• Leaderboard now marks the ID of parent for the evaluated sequences.
• The report shows more information about the sequence.

Singularity image is available from the Zenodo.

VaxPress release 0.4

• Shows progress bar while running LinearDesign.
• VaxPress now can run without iCodon.
• Command line argument --offsprings is renamed to --population.
• Adds new feature that periodically scan all possible single mutations for all unpaired bases. Use --full-scan-interval to change the behavior.

VaxPress release 0.3

• --boost-loop-mutation allows mutations weighted to single-stranded regions
• Added cache for secondary structure prediction
• Optimal interval for GC ratio is narrowed to focused within ~0.35-0.65.