Docker containerisation of MVP #43

shubhamlatkar · 2023-03-03T19:22:55Z

Use Docker to automate the build for the project, using the current dependencies and infrastructure
Update the README.md to provide instructions on how to use the container(s)

1. Added Docker support using Dockerfile. 2. Added docker-compose to avoid the MongoDB setup. 3. Updated the README.md

AbhinavReddy-Dev · 2023-03-04T04:10:12Z

@shubhamlatkar Can you please add the below bind commands for running the docker with local changes?

Plain run
docker run --mount type=bind,source="$(pwd)",target=/usr/src -it <image-tag-here>
With shell
docker run --mount type=bind,source="$(pwd)",target=/usr/src -it <image-tag-here> sh

AbhinavReddy-Dev

I have reviewed the changes made and they seem to be necessary. Also can we add the bind commands in the README.md? Another warning that I came across was regrading the image's platform when building the image on arm64 devices, I shall look into it and update, please update if we already have any idea of getting rid of the warning.

shubhamlatkar · 2023-03-04T04:21:54Z

I have reviewed the changes made and they seem to be necessary. Also can we add the bind commands in the README.md? Another warning that I came across was regrading the image's platform when building the image on arm64 devices, I shall look into it and update, please update if we already have any idea of getting rid of the warning.

Hi @AbhinavReddy-Dev could you add the logs of warnings you are getting.

AbhinavReddy-Dev · 2023-03-04T04:48:39Z

@shubhamlatkar sure, here's the warning for the image platform.
abhinavreddy@abhinavreddy PantryNode % docker run --mount type=bind,source="$(pwd)",target=/usr/src -it pantry-node sh WARNING: The requested image's platform (linux/amd64) does not match the detected host platform (linux/arm64/v8) and no specific platform was requested /app #

shubhamlatkar · 2023-03-04T06:42:10Z

@shubhamlatkar sure, here's the warning for the image platform.
abhinavreddy@abhinavreddy PantryNode % docker run --mount type=bind,source="$(pwd)",target=/usr/src -it pantry-node sh WARNING: The requested image's platform (linux/amd64) does not match the detected host platform (linux/arm64/v8) and no specific platform was requested /app #

Hi @AbhinavReddy-Dev you are mounting the wrong directory target=/usr/src but our src code is in /app.
And warning is because you have not used the --platform linux/amd64 tag in docker run cmd.
As you are using ARM64 based system and linux container is linux/amd64 based so you'll need to add --platform tag
Adding it might solve this issue.

AbhinavReddy-Dev · 2023-03-04T07:35:36Z

@shubhamlatkar Thank you, I was able to run it successfully using the below command.
docker run --platform linux/amd64 --mount type=bind,source="$(pwd)",target=/usr/app -it pantry-node

shubhamlatkar · 2023-03-04T07:52:45Z

@shubhamlatkar Thank you, I was able to run it successfully using the below command.
docker run --platform linux/amd64 --mount type=bind,source="$(pwd)",target=/usr/app -it pantry-node

Actually target=/usr/app should be target=/app

AbhinavReddy-Dev · 2023-03-04T20:54:20Z

@shubhamlatkar Thank you, I was able to run it successfully using the below command.
docker run --platform linux/amd64 --mount type=bind,source="$(pwd)",target=/usr/app -it pantry-node

Actually target=/usr/app should be target=/app

yes, you're right!

sourabhk25 · 2023-03-05T23:54:37Z

I am getting below error while executing docker run command -

(base) sourabhkulkarni@Sourabhs-MacBook-Pro PantryNode % docker run -p 3000:3000 my-app

project@0.0.0 start
node ./bin/www

/app/node_modules/send/node_modules/http-errors/index.js:261
var name = toIdentifier(statuses.message[code])
^

TypeError: Cannot read properties of undefined (reading '100')
at forEachCode (/app/node_modules/send/node_modules/http-errors/index.js:261:45)
at Array.forEach ()
at populateConstructorExports (/app/node_modules/send/node_modules/http-errors/index.js:259:9)
at Object. (/app/node_modules/send/node_modules/http-errors/index.js:31:1)
at Module._compile (node:internal/modules/cjs/loader:1191:14)
at Object.Module._extensions..js (node:internal/modules/cjs/loader:1245:10)
at Module.load (node:internal/modules/cjs/loader:1069:32)
at Function.Module._load (node:internal/modules/cjs/loader:904:12)
at Module.require (node:internal/modules/cjs/loader:1093:19)
at require (node:internal/modules/cjs/helpers:108:18)

AbhinavReddy-Dev · 2023-03-06T00:08:24Z

I am getting below error while executing docker run command -

(base) sourabhkulkarni@Sourabhs-MacBook-Pro PantryNode % docker run -p 3000:3000 my-app

project@0.0.0 start
node ./bin/www

/app/node_modules/send/node_modules/http-errors/index.js:261 var name = toIdentifier(statuses.message[code]) ^

TypeError: Cannot read properties of undefined (reading '100') at forEachCode (/app/node_modules/send/node_modules/http-errors/index.js:261:45) at Array.forEach () at populateConstructorExports (/app/node_modules/send/node_modules/http-errors/index.js:259:9) at Object. (/app/node_modules/send/node_modules/http-errors/index.js:31:1) at Module._compile (node:internal/modules/cjs/loader:1191:14) at Object.Module._extensions..js (node:internal/modules/cjs/loader:1245:10) at Module.load (node:internal/modules/cjs/loader:1069:32) at Function.Module._load (node:internal/modules/cjs/loader:904:12) at Module.require (node:internal/modules/cjs/loader:1093:19) at require (node:internal/modules/cjs/helpers:108:18)

It doesn't look like the docker error but what is the build command that you have used?

sourabhk25 · 2023-03-06T02:15:57Z

I am getting below error while executing docker run command -
(base) sourabhkulkarni@Sourabhs-MacBook-Pro PantryNode % docker run -p 3000:3000 my-app

project@0.0.0 start
node ./bin/www

/app/node_modules/send/node_modules/http-errors/index.js:261 var name = toIdentifier(statuses.message[code]) ^
TypeError: Cannot read properties of undefined (reading '100') at forEachCode (/app/node_modules/send/node_modules/http-errors/index.js:261:45) at Array.forEach () at populateConstructorExports (/app/node_modules/send/node_modules/http-errors/index.js:259:9) at Object. (/app/node_modules/send/node_modules/http-errors/index.js:31:1) at Module._compile (node:internal/modules/cjs/loader:1191:14) at Object.Module._extensions..js (node:internal/modules/cjs/loader:1245:10) at Module.load (node:internal/modules/cjs/loader:1069:32) at Function.Module._load (node:internal/modules/cjs/loader:904:12) at Module.require (node:internal/modules/cjs/loader:1093:19) at require (node:internal/modules/cjs/helpers:108:18)

It doesn't look like the docker error but what is the build command that you have used?

I used the below command to build the docker container -
docker build --platform linux/amd64 -t my-app .

PS - The application runs on my local machine if I use my MongoDB Atlas instance, but I am getting the error mentioned only while using Docker.

FYI, I am using mac with M2 chip.

AbhinavReddy-Dev · 2023-03-06T20:21:04Z

Can we make a merge of this? Please review @Jooms @sourabhk25

shubhamlatkar · 2023-03-12T19:48:22Z

@sourabhk25

I tried many things, but I am still getting the same issue. If anyone else with a Mac confirms that changes are working for them, then I will assume the issue is in my machine and approve the review as well.

I'm getting the same issue as well.

 docker-compose up
[+] Running 2/0
 - Container database  Created                                                                                                                    0.0s
 - Container node      Created                                                                                                                    0.0s
Attaching to database, node
database  | {"t":{"$date":"2023-03-12T02:47:44.126+00:00"},"s":"I",  "c":"NETWORK",  "id":4915701, "ctx":"main","msg":"Initialized wire specification","attr":{"spec":{"incomingExternalClient":{"minWireVersion":0,"maxWireVersion":17},"incomingInternalClient":{"minWireVersion":0,"maxWireVersion":17},"outgoing":{"minWireVersion":6,"maxWireVersion":17},"isInternalClient":true}}}
database  | {"t":{"$date":"2023-03-12T02:47:44.126+00:00"},"s":"I",  "c":"CONTROL",  "id":23285,   "ctx":"main","msg":"Automatically disabling TLS 1.0, to force-enable TLS 1.0 specify --sslDisabledProtocols 'none'"}
database  | {"t":{"$date":"2023-03-12T02:47:44.127+00:00"},"s":"I",  "c":"NETWORK",  "id":4648601, "ctx":"main","msg":"Implicit TCP FastOpen unavailable. If TCP FastOpen is required, set tcpFastOpenServer, tcpFastOpenClient, and tcpFastOpenQueueSize."}
database  | {"t":{"$date":"2023-03-12T02:47:44.128+00:00"},"s":"I",  "c":"REPL",     "id":5123008, "ctx":"main","msg":"Successfully registered PrimaryOnlyService","attr":{"service":"TenantMigrationDonorService","namespace":"config.tenantMigrationDonors"}}
database  | {"t":{"$date":"2023-03-12T02:47:44.128+00:00"},"s":"I",  "c":"REPL",     "id":5123008, "ctx":"main","msg":"Successfully registered PrimaryOnlyService","attr":{"service":"TenantMigrationRecipientService","namespace":"config.tenantMigrationRecipients"}}
database  | {"t":{"$date":"2023-03-12T02:47:44.128+00:00"},"s":"I",  "c":"REPL",     "id":5123008, "ctx":"main","msg":"Successfully registered PrimaryOnlyService","attr":{"service":"ShardSplitDonorService","namespace":"config.tenantSplitDonors"}}
database  | {"t":{"$date":"2023-03-12T02:47:44.128+00:00"},"s":"I",  "c":"CONTROL",  "id":5945603, "ctx":"main","msg":"Multi threading initialized"}
database  | {"t":{"$date":"2023-03-12T02:47:44.128+00:00"},"s":"I",  "c":"CONTROL",  "id":4615611, "ctx":"initandlisten","msg":"MongoDB starting","attr":{"pid":1,"port":27017,"dbPath":"/data/db","architecture":"64-bit","host":"cb14b8355d93"}}
database  | {"t":{"$date":"2023-03-12T02:47:44.128+00:00"},"s":"I",  "c":"CONTROL",  "id":23403,   "ctx":"initandlisten","msg":"Build Info","attr":{"buildInfo":{"version":"6.0.4","gitVersion":"44ff59461c1353638a71e710f385a566bcd2f547","openSSLVersion":"OpenSSL 3.0.2 15 Mar 2022","modules":[],"allocator":"tcmalloc","environment":{"distmod":"ubuntu2204","distarch":"x86_64","target_arch":"x86_64"}}}}
database  | {"t":{"$date":"2023-03-12T02:47:44.128+00:00"},"s":"I",  "c":"CONTROL",  "id":51765,   "ctx":"initandlisten","msg":"Operating System","attr":{"os":{"name":"Ubuntu","version":"22.04"}}}
database  | {"t":{"$date":"2023-03-12T02:47:44.128+00:00"},"s":"I",  "c":"CONTROL",  "id":21951,   "ctx":"initandlisten","msg":"Options set by command line","attr":{"options":{"net":{"bindIp":"*"}}}}
database  | {"t":{"$date":"2023-03-12T02:47:44.128+00:00"},"s":"I",  "c":"STORAGE",  "id":22270,   "ctx":"initandlisten","msg":"Storage engine to use detected by data files","attr":{"dbpath":"/data/db","storageEngine":"wiredTiger"}}
database  | {"t":{"$date":"2023-03-12T02:47:44.128+00:00"},"s":"I",  "c":"STORAGE",  "id":22297,   "ctx":"initandlisten","msg":"Using the XFS filesystem is strongly recommended with the WiredTiger storage engine. See http://dochub.mongodb.org/core/prodnotes-filesystem","tags":["startupWarnings"]}
database  | {"t":{"$date":"2023-03-12T02:47:44.129+00:00"},"s":"I",  "c":"STORAGE",  "id":22315,   "ctx":"initandlisten","msg":"Opening WiredTiger","attr":{"config":"create,cache_size=3445M,session_max=33000,eviction=(threads_min=4,threads_max=4),config_base=false,statistics=(fast),log=(enabled=true,remove=true,path=journal,compressor=snappy),builtin_extension_config=(zstd=(compression_level=6)),file_manager=(close_idle_time=600,close_scan_interval=10,close_handle_minimum=2000),statistics_log=(wait=0),json_output=(error,message),verbose=[recovery_progress:1,checkpoint_progress:1,compact_progress:1,backup:0,checkpoint:0,compact:0,evict:0,history_store:0,recovery:0,rts:0,salvage:0,tiered:0,timestamp:0,transaction:0,verify:0,log:0],"}}
database  | {"t":{"$date":"2023-03-12T02:47:44.810+00:00"},"s":"I",  "c":"STORAGE",  "id":4795906, "ctx":"initandlisten","msg":"WiredTiger opened","attr":{"durationMillis":681}}
database  | {"t":{"$date":"2023-03-12T02:47:44.810+00:00"},"s":"I",  "c":"RECOVERY", "id":23987,   "ctx":"initandlisten","msg":"WiredTiger recoveryTimestamp","attr":{"recoveryTimestamp":{"$timestamp":{"t":0,"i":0}}}}
database  | {"t":{"$date":"2023-03-12T02:47:44.814+00:00"},"s":"W",  "c":"CONTROL",  "id":22120,   "ctx":"initandlisten","msg":"Access control is not enabled for the database. Read and write access to data and configuration is unrestricted","tags":["startupWarnings"]}
database  | {"t":{"$date":"2023-03-12T02:47:44.814+00:00"},"s":"W",  "c":"CONTROL",  "id":22178,   "ctx":"initandlisten","msg":"/sys/kernel/mm/transparent_hugepage/enabled is 'always'. We suggest setting it to 'never'","tags":["startupWarnings"]}
database  | {"t":{"$date":"2023-03-12T02:47:44.814+00:00"},"s":"W",  "c":"CONTROL",  "id":5123300, "ctx":"initandlisten","msg":"vm.max_map_count is too low","attr":{"currentValue":65530,"recommendedMinimum":1677720,"maxConns":838860},"tags":["startupWarnings"]}
database  | {"t":{"$date":"2023-03-12T02:47:44.816+00:00"},"s":"I",  "c":"NETWORK",  "id":4915702, "ctx":"initandlisten","msg":"Updated wire specification","attr":{"oldSpec":{"incomingExternalClient":{"minWireVersion":0,"maxWireVersion":17},"incomingInternalClient":{"minWireVersion":0,"maxWireVersion":17},"outgoing":{"minWireVersion":6,"maxWireVersion":17},"isInternalClient":true},"newSpec":{"incomingExternalClient":{"minWireVersion":0,"maxWireVersion":17},"incomingInternalClient":{"minWireVersion":17,"maxWireVersion":17},"outgoing":{"minWireVersion":17,"maxWireVersion":17},"isInternalClient":true}}}
database  | {"t":{"$date":"2023-03-12T02:47:44.816+00:00"},"s":"I",  "c":"REPL",     "id":5853300, "ctx":"initandlisten","msg":"current featureCompatibilityVersion value","attr":{"featureCompatibilityVersion":"6.0","context":"startup"}}
database  | {"t":{"$date":"2023-03-12T02:47:44.816+00:00"},"s":"I",  "c":"STORAGE",  "id":5071100, "ctx":"initandlisten","msg":"Clearing temp directory"}
database  | {"t":{"$date":"2023-03-12T02:47:44.817+00:00"},"s":"I",  "c":"CONTROL",  "id":20536,   "ctx":"initandlisten","msg":"Flow Control is enabled on this deployment"}
database  | {"t":{"$date":"2023-03-12T02:47:44.818+00:00"},"s":"I",  "c":"FTDC",     "id":20625,   "ctx":"initandlisten","msg":"Initializing full-time diagnostic data capture","attr":{"dataDirectory":"/data/db/diagnostic.data"}}
database  | {"t":{"$date":"2023-03-12T02:47:44.820+00:00"},"s":"I",  "c":"REPL",     "id":6015317, "ctx":"initandlisten","msg":"Setting new configuration state","attr":{"newState":"ConfigReplicationDisabled","oldState":"ConfigPreStart"}}
database  | {"t":{"$date":"2023-03-12T02:47:44.820+00:00"},"s":"I",  "c":"STORAGE",  "id":22262,   "ctx":"initandlisten","msg":"Timestamp monitor starting"}
database  | {"t":{"$date":"2023-03-12T02:47:44.821+00:00"},"s":"I",  "c":"NETWORK",  "id":23015,   "ctx":"listener","msg":"Listening on","attr":{"address":"/tmp/mongodb-27017.sock"}}
database  | {"t":{"$date":"2023-03-12T02:47:44.821+00:00"},"s":"I",  "c":"NETWORK",  "id":23015,   "ctx":"listener","msg":"Listening on","attr":{"address":"0.0.0.0"}}
database  | {"t":{"$date":"2023-03-12T02:47:44.821+00:00"},"s":"I",  "c":"NETWORK",  "id":23016,   "ctx":"listener","msg":"Waiting for connections","attr":{"port":27017,"ssl":"off"}}
node      |
node      | > project@0.0.0 start
node      | > node ./bin/www
node      |
node      | /app/node_modules/send/node_modules/http-errors/index.js:261
node      |     var name = toIdentifier(statuses.message[code])
node      |                                             ^
node      |
node      | TypeError: Cannot read properties of undefined (reading '100')
node      |     at forEachCode (/app/node_modules/send/node_modules/http-errors/index.js:261:45)
node      |     at Array.forEach (<anonymous>)
node      |     at populateConstructorExports (/app/node_modules/send/node_modules/http-errors/index.js:259:9)
node      |     at Object.<anonymous> (/app/node_modules/send/node_modules/http-errors/index.js:31:1)
node      |     at Module._compile (node:internal/modules/cjs/loader:1275:14)
node      |     at Module._extensions..js (node:internal/modules/cjs/loader:1329:10)
node      |     at Module.load (node:internal/modules/cjs/loader:1133:32)
node      |     at Module._load (node:internal/modules/cjs/loader:972:12)
node      |     at Module.require (node:internal/modules/cjs/loader:1157:19)
node      |     at require (node:internal/modules/helpers:119:18)
node      |
node      | Node.js v19.7.0
node exited with code 1

Hi @sourabhk25, @Jooms there seems to be an issue with http-errors package for ARM64 systems.

Any suggestion on how can we resolve it?

Jooms · 2023-03-13T01:09:58Z

there seems to be an issue with http-errors package for ARM64 systems

How did you determine this?

AbhinavReddy-Dev · 2023-03-13T02:01:30Z

Do we need to worry about containerizing mongoDB? We are anyways migrating it to PostgreSQL, some coordination with backend team to provide with code that doesn't have mongo references and only PostgreSQL references should be enough to try containerizing this locally and then a merge into main. Please let me know if I have overlooked any issue in this approach.

shubhamlatkar · 2023-03-13T04:11:41Z

there seems to be an issue with http-errors package for ARM64 systems

How did you determine this?

The issue is in node_modules/http-errors/index.js
And the container is working fine on AMD64 systems

Jooms · 2023-03-13T04:16:08Z

The issue is in node_modules/http-errors/index.js
And the container is working fine on AMD64 systems

I'm on an AMD 64 system... So, how did you determine this?

Processor AMD Ryzen 9 5900

shubhamlatkar · 2023-03-13T04:16:48Z

Do we need to worry about containerizing mongoDB? We are anyways migrating it to PostgreSQL, some coordination with backend team to provide with code that doesn't have mongo references and only PostgreSQL references should be enough to try containerizing this locally and then a merge into main. Please let me know if I have overlooked any issue in this approach.

MongoDB container was added to avoid the need for setting up a local database. However, we will need to remove it once the project is migrated to PostgreSQL. For now, we can skip setting up the database container. But I think there are no issues with the MongoDB container at this time.

shubhamlatkar · 2023-03-13T04:37:20Z

The issue is in node_modules/http-errors/index.js
And the container is working fine on AMD64 systems

I'm on an AMD 64 system... So, how did you determine this?

Processor AMD Ryzen 9 5900

It's strange because I ran the program on a cloud platform that randomly assigns x86/AMD64 systems, and it worked without any issues.
You can try upgrading http-errors pkg to latest version.

Jooms · 2023-03-13T05:57:38Z

Figured it out

When the Dockerfile is run on a repo that has already been built locally, there's a node_modules folder that is copied over as part of COPY . .

Solution: Add a .dockerignore file.

Pushing a commit with the change.

Jooms · 2023-03-13T06:01:50Z

Runs locally for me.

…etup' subsection to have similar styling to rest of readme

decoles · 2023-03-13T06:40:38Z

I updated the readme to exclude the old setup instructions as they weren't useful afaik for the docker container and updated the formatting under docker setup subsection to match formatting of the rest of the document.

shubhamlatkar · 2023-03-13T06:44:03Z

Figured it out

When the Dockerfile is run on a repo that has already been built locally, there's a node_modules folder that is copied over as part of COPY . .

Solution: Add a .dockerignore file.

Pushing a commit with the change.

Nice catch @Jooms!!!
Thanks for the fix.

AbhinavReddy-Dev · 2023-03-13T10:22:02Z

Are the latest changes available in any branch to run it locally? Please quote it here.

AbhinavReddy-Dev · 2023-03-13T10:25:57Z

Are the latest changes available in any branch to run it locally? Please quote it here.

NVM was able to do it.

shubhamlatkar · 2023-03-13T17:32:58Z

Hi team can we merge the changes to the main?

Jooms · 2023-03-13T18:15:17Z

Fixed merge conflict. Approving once more
@AbhinavReddy-Dev Can you approve as well since you confirmed it works for ya?

Then @shubhamlatkar Can you merge as soon as there are 2 approvals?

decoles

Runs for me!

- [X] Use Docker to automate the build for the project, using the current dependencies and infrastructure - [X] Update the `README.md` to provide instructions on how to use the container(s)

shubhamlatkar added 10 commits February 28, 2023 10:03

Created a Dockerfile to Containerize MVP. fixes #18

a74595b

Added docker cmds to README

e14b083

Added docker compose

54cdd6d

Updated mongo URI to connect to docker based mongo DB

fe555a8

Added docker-compose based setup to test locally

47e78b8

Removed extra white space

b659daa

Updated docker build command to run on ARM64

2687542

Added platform to support on ARM64

3a9c51a

Removed useless container tag

82867b9

Containerisation of MVP (#34)

e8e5153

1. Added Docker support using Dockerfile. 2. Added docker-compose to avoid the MongoDB setup. 3. Updated the README.md

shubhamlatkar requested a review from kbuffardi March 3, 2023 19:23

shubhamlatkar linked an issue Mar 3, 2023 that may be closed by this pull request

Containerize MVP #18

Closed

2 tasks

hardikpatil requested review from Jooms, AbhinavReddy-Dev and sourabhk25 March 3, 2023 19:26

AbhinavReddy-Dev requested changes Mar 4, 2023

View reviewed changes

AbhinavReddy-Dev assigned AbhinavReddy-Dev, sourabhk25 and shubhamlatkar Mar 6, 2023

Add dockerignore file

effe9a8

Jooms dismissed AbhinavReddy-Dev’s stale review via effe9a8 March 13, 2023 05:57

Jooms previously approved these changes Mar 13, 2023

View reviewed changes

Jooms mentioned this pull request Mar 13, 2023

Containerize MVP #18

Closed

2 tasks

decoles added 2 commits March 12, 2023 23:33

Updated README to remove old setup instructions and updated 'docker s…

539d7d2

…etup' subsection to have similar styling to rest of readme

Updated README to remove old setup and easier to see docker commands

22bb6da

decoles dismissed Jooms’s stale review via 22bb6da March 13, 2023 06:37

fixed typo in readme Brower -> Browser

e012ac9

Merge branch 'main' into docker-container

cc8d280

Jooms approved these changes Mar 13, 2023

View reviewed changes

decoles approved these changes Mar 13, 2023

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AbhinavReddy-Dev approved these changes Mar 13, 2023

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shubhamlatkar merged commit 33cc130 into main Mar 13, 2023

shubhamlatkar deleted the docker-container branch March 13, 2023 21:18

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shubhamlatkar commented Mar 3, 2023 •

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