added overlap computation to stitching

Chlanda-Lab · Jun 30, 2021 · a26a85e · a26a85e
1 parent f66675f
commit a26a85e
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Showing 3 changed files with 2 additions and 3 deletions.
diff --git a/.idea/encodings.xml b/.idea/encodings.xml
diff --git a/.idea/misc.xml b/.idea/misc.xml
diff --git a/fiji_plugin/src/main/java/StitchTileScan.java b/fiji_plugin/src/main/java/StitchTileScan.java
@@ -149,7 +149,7 @@ public MaxProjection call() throws Exception {
                     String.format("type=[Positions from file] " + "order=[Defined by TileConfiguration] " + "directory=[%s] "
                             + "layout_file=[%s] " + "fusion_method=[Linear Blending] "
                             + "regression_threshold=0.30 " + "max/avg_displacement_threshold=2.50 "
-                            + "absolute_displacement_threshold=3.50 " + "add_tiles_as_rois " + "ignore_z_stage "
+                            + "absolute_displacement_threshold=3.50 " + "add_tiles_as_rois " + "compute_overlap "
                             + "subpixel_accuracy " + "computation_parameters=[Save computation time (but use more RAM)] "
                             + "image_output=[Fuse and display]", this.max_projection_dir, tileconfig.getName()));