Update to v 1.2.1

ChrisMaherLab · Jan 18, 2017 · 707a00e · 707a00e
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diff --git a/Examples/example1/fusion_antigen_out/HLAminer_HPRA.csv b/Examples/example1/fusion_antigen_out/HLAminer_HPRA.csv
diff --git a/Examples/example1/fusion_antigen_out/HLAminer_HPRA.log b/Examples/example1/fusion_antigen_out/HLAminer_HPRA.log
diff --git a/Examples/example1/fusion_antigen_out/HLAminer_alleles.tsv b/Examples/example1/fusion_antigen_out/HLAminer_alleles.tsv
diff --git a/Examples/example1/fusion_antigen_out/fusions.bedpe.annot b/Examples/example1/fusion_antigen_out/fusions.bedpe.annot
diff --git a/Examples/example1/fusion_antigen_out/fusions.bedpe.subset b/Examples/example1/fusion_antigen_out/fusions.bedpe.subset
diff --git a/Examples/example1/fusion_antigen_out/fusions.bedpe.subset.tmp b/Examples/example1/fusion_antigen_out/fusions.bedpe.subset.tmp
diff --git a/Examples/example1/fusion_antigen_out/netMHC4.0.out.append.txt b/Examples/example1/fusion_antigen_out/netMHC4.0.out.append.txt
diff --git a/Examples/example1/fusion_antigen_out/result.bedpe b/Examples/example1/fusion_antigen_out/result.bedpe
diff --git a/Examples/example1/fusion_antigen_out/tmp/1.sai b/Examples/example1/fusion_antigen_out/tmp/1.sai
diff --git a/Examples/example1/fusion_antigen_out/tmp/2.sai b/Examples/example1/fusion_antigen_out/tmp/2.sai
diff --git a/Examples/example1/fusion_antigen_out/tmp/all.sam b/Examples/example1/fusion_antigen_out/tmp/all.sam
diff --git a/Examples/example1/fusion_antigen_out/tmp/netMHC4.0.k10.fasta b/Examples/example1/fusion_antigen_out/tmp/netMHC4.0.k10.fasta
diff --git a/Examples/example1/fusion_antigen_out/tmp/netMHC4.0.k11.fasta b/Examples/example1/fusion_antigen_out/tmp/netMHC4.0.k11.fasta
diff --git a/Examples/example1/fusion_antigen_out/tmp/netMHC4.0.k8.fasta b/Examples/example1/fusion_antigen_out/tmp/netMHC4.0.k8.fasta
diff --git a/Examples/example1/fusion_antigen_out/tmp/netMHC4.0.k9.fasta b/Examples/example1/fusion_antigen_out/tmp/netMHC4.0.k9.fasta
diff --git a/Examples/example2/fusion_antigen_out/fusions.bedpe.annot b/Examples/example2/fusion_antigen_out/fusions.bedpe.annot
diff --git a/Examples/example2/fusion_antigen_out/fusions.bedpe.subset b/Examples/example2/fusion_antigen_out/fusions.bedpe.subset
diff --git a/Examples/example2/fusion_antigen_out/fusions.bedpe.subset.tmp b/Examples/example2/fusion_antigen_out/fusions.bedpe.subset.tmp
diff --git a/Examples/example2/fusion_antigen_out/netMHC4.0.out.append.txt b/Examples/example2/fusion_antigen_out/netMHC4.0.out.append.txt
diff --git a/Examples/example2/fusion_antigen_out/result.bedpe b/Examples/example2/fusion_antigen_out/result.bedpe
diff --git a/Examples/example2/fusion_antigen_out/tmp/netMHC4.0.k10.fasta b/Examples/example2/fusion_antigen_out/tmp/netMHC4.0.k10.fasta
diff --git a/Examples/example2/fusion_antigen_out/tmp/netMHC4.0.k11.fasta b/Examples/example2/fusion_antigen_out/tmp/netMHC4.0.k11.fasta
diff --git a/Examples/example2/fusion_antigen_out/tmp/netMHC4.0.k8.fasta b/Examples/example2/fusion_antigen_out/tmp/netMHC4.0.k8.fasta
diff --git a/Examples/example2/fusion_antigen_out/tmp/netMHC4.0.k9.fasta b/Examples/example2/fusion_antigen_out/tmp/netMHC4.0.k9.fasta
diff --git a/INTEGRATE-Neo-V-1.2.0/install.sh b/INTEGRATE-Neo-V-1.2.0/install.sh
diff --git a/INTEGRATE-Neo-V-1.2.0/src/BedpeAnnotator/CMakeLists.txt b/INTEGRATE-Neo-V-1.2.0/src/BedpeAnnotator/CMakeLists.txt