Documentation and scripts for Chromatin Analysis and assorted data integration
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Documentation
scripts
README.md

README.md

Repository of scripts that I've made/appropriated and general tidbits. Obviously varies case by case, but core steps are described in:

Otherwise jump into the scripts folders of:

  • Core scripts: Things that are completed and have posix or flag based input

  • BAM2SizePlot.py is the package for 3D plotting size differentiateing chromatin accessibility data.

  • R-scripts: Often esoteric and environment-specific processing and charting mid-length scripts, ask if explanation needed.

  • General Tidbits: Helpful oneliners and notes

  • Unfinished: Scripts that are still in progress, or have been paused for a later date. Would not recommend.