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Implement ConcatenatedVectorNormMap + develop projects/OceanBoundaryLayerParameterizations #167

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Apr 7, 2022
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675ff4b
Updates to `calibrate_catke_to_perfect_model.jl`
adelinehillier Jan 12, 2022
3c913a9
Save IterationSummary after resampling
adelinehillier Jan 12, 2022
cb61ca6
Merge branch 'ah/calibrate' of https://github.com/CliMA/OceanTurbulen…
adelinehillier Jan 12, 2022
6595c0b
Merge branch 'glw/resampler' of https://github.com/CliMA/OceanTurbule…
adelinehillier Jan 17, 2022
58df5a7
Merge branch 'main' of https://github.com/CliMA/OceanTurbulenceParame…
adelinehillier Jan 18, 2022
a9b83e9
Fix regrid bug in SyntheticObservations
adelinehillier Jan 18, 2022
842bd16
Implement ConcatenatedVectorNormMap
adelinehillier Jan 19, 2022
0df6700
Make `ConcatenatedVectorNormMap` work with EKI
adelinehillier Jan 19, 2022
0870842
Add `objective_values` to iteration summary
adelinehillier Jan 19, 2022
6b54247
Take sqrt of norm in `ConcatenatedVectorNormMap`
adelinehillier Jan 19, 2022
050ed4b
Debug `objective_values`
adelinehillier Jan 19, 2022
201923b
Seed random number generator
adelinehillier Jan 19, 2022
3393df7
Minor update hidden example scripts
adelinehillier Jan 19, 2022
c5f74ae
Update docstring
adelinehillier Jan 19, 2022
93cf32d
Add `architecture` to `build_ensemble_simulation`
adelinehillier Jan 19, 2022
f2e94b8
Add GPU functionality
adelinehillier Jan 19, 2022
e0c9c07
Initialize sim to 1st time specified in OutputMap
adelinehillier Jan 20, 2022
fbf55cd
Merge branch 'main' of https://github.com/CliMA/OceanTurbulenceParame…
adelinehillier Jan 20, 2022
53b5cac
`initial_time_index` for output maps
adelinehillier Jan 20, 2022
860a2bd
Update project and manifest
adelinehillier Jan 20, 2022
784de16
Update example scripts
adelinehillier Jan 20, 2022
3218ee2
Merge branch 'ah/calibrate' of https://github.com/CliMA/OceanTurbulen…
adelinehillier Jan 20, 2022
f36fdef
Resolve dependency issues
adelinehillier Jan 24, 2022
83eef23
Delete `bug_test.jl`
adelinehillier Jan 24, 2022
9c1769c
Move EKI visualization utils to `utils`
adelinehillier Jan 24, 2022
59b43cd
Ignore the IC in `transform_time_series`
adelinehillier Jan 24, 2022
c9203da
New function `with_grid_size` for FieldTimeSeries
adelinehillier Jan 24, 2022
d4f6663
Clean up hidden example scripts
adelinehillier Jan 24, 2022
0bd9a74
Merge branch 'ah/calibrate' of https://github.com/CliMA/OceanTurbulen…
adelinehillier Jan 24, 2022
15be817
Resolve dependency errors
adelinehillier Jan 24, 2022
e630bc1
Merge branch 'glw/lesbrary-example' of https://github.com/CliMA/Ocean…
adelinehillier Jan 24, 2022
d0fe220
Start using DataDeps in hidden examples
adelinehillier Jan 26, 2022
91d59c4
Merge branch 'glw/fix-regridding' of https://github.com/CliMA/OceanTu…
adelinehillier Jan 26, 2022
2088f1d
Move hidden example scripts to projects
adelinehillier Jan 26, 2022
792227e
Merge branch 'main' of https://github.com/CliMA/OceanTurbulenceParame…
adelinehillier Jan 26, 2022
a45b02e
Merge branch 'fix-regrid' of https://github.com/CliMA/OceanTurbulence…
adelinehillier Jan 26, 2022
eac3aca
Move hidden examples to project examples
adelinehillier Jan 26, 2022
b41d06c
Move example scripts
adelinehillier Jan 27, 2022
190dc6f
Add convenience functions for using LESbrary data
adelinehillier Jan 27, 2022
d21d1b2
Dependency updates
adelinehillier Jan 27, 2022
e981087
Comment typo
adelinehillier Jan 27, 2022
7830894
Merge branch 'fix-regrid' of https://github.com/CliMA/OceanTurbulence…
adelinehillier Jan 27, 2022
eb2e0fb
Merge branch 'main' of https://github.com/CliMA/OceanTurbulenceParame…
adelinehillier Jan 27, 2022
6d50a23
`forward_map` -> `forward_map_output`
adelinehillier Jan 27, 2022
cb51276
Add function to estimate obs noise covariance
adelinehillier Jan 28, 2022
0f8b114
Cleanup
adelinehillier Jan 28, 2022
bcb01bb
Merge branch 'glw/normalization' of https://github.com/CliMA/OceanTur…
adelinehillier Jan 28, 2022
ca0040f
Fix `zero_column` size in `column_ensemble_interior`
adelinehillier Jan 30, 2022
2814599
Cleanup
adelinehillier Jan 30, 2022
d0db650
Add warning for setting fields to zeros
adelinehillier Jan 31, 2022
19cdf72
Merge branch 'main' of https://github.com/CliMA/OceanTurbulenceParame…
adelinehillier Jan 31, 2022
d706324
Merge branch 'main' of https://github.com/CliMA/OceanTurbulenceParame…
adelinehillier Feb 3, 2022
484a207
Merge remote-tracking branch 'origin/glw/fix-drop-y-direction' into a…
adelinehillier Feb 4, 2022
b95e74b
Merge branch 'glw/fix-drop-y-direction' of https://github.com/CliMA/O…
adelinehillier Feb 4, 2022
6b8dc3b
Defunct function removal
adelinehillier Feb 4, 2022
e1a096b
Add space
adelinehillier Feb 4, 2022
3cce859
`A` -> `field_time_series_interior`
adelinehillier Feb 4, 2022
da3d77d
Updates
adelinehillier Feb 4, 2022
294ff15
Merge branch 'ah/calibrate' of https://github.com/CliMA/OceanTurbulen…
adelinehillier Feb 4, 2022
1cc555b
Merge branch 'main' of https://github.com/CliMA/OceanTurbulenceParame…
adelinehillier Feb 4, 2022
0b6b3a5
Merge branch 'main' of https://github.com/CliMA/OceanLearning.jl into…
adelinehillier Mar 18, 2022
6f59730
Remove CUDA and CairoMakie dependencies
adelinehillier Mar 18, 2022
467a715
Accommodate merged changes
adelinehillier Mar 19, 2022
5539924
empty line at end of files
navidcy Mar 19, 2022
b5cbcd3
Add "convenience vectorized version" for `transform_to_unconstrained`
adelinehillier Mar 19, 2022
bde736c
Updates
adelinehillier Mar 22, 2022
77fee4d
Merge branch 'ah/calibrate' of https://github.com/CliMA/OceanLearning…
adelinehillier Mar 22, 2022
413dcf4
Add OceanBoundaryLayerParameterizations to gitignore
adelinehillier Mar 24, 2022
bbc9aa6
Delete projects directory
adelinehillier Mar 24, 2022
362a931
Update src/iteration_summary.jl
adelinehillier Mar 24, 2022
30b32ae
Delete `catke_parameters.jl`
adelinehillier Mar 24, 2022
1b9f5bc
Merge branch 'ah/calibrate' of https://github.com/CliMA/OceanLearning…
adelinehillier Mar 24, 2022
1f74204
Update src/InverseProblems.jl
adelinehillier Mar 24, 2022
342c768
Update src/InverseProblems.jl
adelinehillier Mar 24, 2022
6069157
Update src/iteration_summary.jl
adelinehillier Mar 24, 2022
77f32d2
Update src/InverseProblems.jl
adelinehillier Mar 24, 2022
d0b85c3
Update src/InverseProblems.jl
adelinehillier Mar 24, 2022
a8eb6d7
Update src/iteration_summary.jl
adelinehillier Mar 24, 2022
8c3aa5a
Remove LaTeXStrings dependency
adelinehillier Mar 24, 2022
17dfc20
Merge branch 'ah/calibrate' of https://github.com/CliMA/OceanLearning…
adelinehillier Mar 24, 2022
e3c12c3
Use subscript notation in `eki_objective` docstring
adelinehillier Mar 24, 2022
449a72a
Merge branch 'main' of https://github.com/CliMA/ParameterEstimocean.j…
adelinehillier Apr 5, 2022
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2 changes: 1 addition & 1 deletion .gitignore
Original file line number Diff line number Diff line change
Expand Up @@ -39,4 +39,4 @@ Results/

*.code-workspace

data
data
14 changes: 7 additions & 7 deletions Manifest.toml
Original file line number Diff line number Diff line change
Expand Up @@ -340,9 +340,9 @@ version = "0.21.3"

[[JSON3]]
deps = ["Dates", "Mmap", "Parsers", "StructTypes", "UUIDs"]
git-tree-sha1 = "7d58534ffb62cd947950b3aa9b993e63307a6125"
git-tree-sha1 = "175b6ff26cd0fa01dd60021ce76bbdefdf91e4a0"
uuid = "0f8b85d8-7281-11e9-16c2-39a750bddbf1"
version = "1.9.2"
version = "1.9.3"

[[KernelAbstractions]]
deps = ["Adapt", "Cassette", "InteractiveUtils", "MacroTools", "SpecialFunctions", "StaticArrays", "UUIDs"]
Expand Down Expand Up @@ -549,9 +549,9 @@ version = "0.11.6"

[[Parsers]]
deps = ["Dates"]
git-tree-sha1 = "13468f237353112a01b2d6b32f3d0f80219944aa"
git-tree-sha1 = "85b5da0fa43588c75bb1ff986493443f821c70b7"
uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0"
version = "2.2.2"
version = "2.2.3"

[[PencilArrays]]
deps = ["ArrayInterface", "JSON3", "LinearAlgebra", "MPI", "OffsetArrays", "Random", "Reexport", "Requires", "StaticArrays", "StaticPermutations", "Strided", "TimerOutputs", "VersionParsing"]
Expand Down Expand Up @@ -784,10 +784,10 @@ uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c"
version = "1.0.1"

[[Tables]]
deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "TableTraits", "Test"]
git-tree-sha1 = "bb1064c9a84c52e277f1096cf41434b675cd368b"
deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits", "Test"]
git-tree-sha1 = "5ce79ce186cc678bbb5c5681ca3379d1ddae11a1"
uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
version = "1.6.1"
version = "1.7.0"

[[Tar]]
deps = ["ArgTools", "SHA"]
Expand Down
82 changes: 0 additions & 82 deletions examples/calibrate_to_LESbrary/calibrate_CATKE_to_LESbrary.jl

This file was deleted.

172 changes: 0 additions & 172 deletions examples/calibrate_to_LESbrary/calibrate_catke_to_perfect_model.jl

This file was deleted.