Fix inconsistent parts after clone replica

dbms/src/Storages/StorageReplicatedMergeTree.cpp

@@ -1956,10 +1956,37 @@ void StorageReplicatedMergeTree::cloneReplica(const String & source_replica, Coo
     }
 
     /// Add to the queue jobs to receive all the active parts that the reference/master replica has.
-    Strings parts = zookeeper->getChildren(source_path + "/parts");
-    ActiveDataPartSet active_parts_set(format_version, parts);
+    Strings source_replica_parts = zookeeper->getChildren(source_path + "/parts");
+    ActiveDataPartSet active_parts_set(format_version, source_replica_parts);
 
     Strings active_parts = active_parts_set.getParts();
+
+    /// Remove local parts if source replica does not have them, because such parts will never be fetched by other replicas.
+    Strings local_parts_in_zk = zookeeper->getChildren(replica_path + "/parts");
+    Strings parts_to_remove_from_zk;
+    for (const auto & part : local_parts_in_zk)
+    {
+        if (active_parts_set.getContainingPart(part).empty())
+        {
+            queue.remove(zookeeper, part);
+            parts_to_remove_from_zk.emplace_back(part);
+            LOG_WARNING(log, "Source replica does not have part " << part << ". Removing it from ZooKeeper.");
+        }
+    }
+    tryRemovePartsFromZooKeeperWithRetries(parts_to_remove_from_zk);
+
+    auto local_active_parts = getDataParts();
+    DataPartsVector parts_to_remove_from_working_set;
+    for (const auto & part : local_active_parts)
+    {
+        if (active_parts_set.getContainingPart(part->name).empty())
+        {
+            parts_to_remove_from_working_set.emplace_back(part);
+            LOG_WARNING(log, "Source replica does not have part " << part->name << ". Removing it from working set.");
+        }
+    }
+    removePartsFromWorkingSet(parts_to_remove_from_working_set, true);
+
     for (const String & name : active_parts)
     {
         LogEntry log_entry;

dbms/tests/integration/test_consistent_parts_after_clone_replica/configs/remote_servers.xml

@@ -0,0 +1,19 @@
+<yandex>
+    <remote_servers>
+        <test_cluster>
+            <shard>
+                <internal_replication>true</internal_replication>
+                <replica>
+                    <default_database>shard_0</default_database>
+                    <host>node1</host>
+                    <port>9000</port>
+                </replica>
+                <replica>
+                    <default_database>shard_0</default_database>
+                    <host>node2</host>
+                    <port>9000</port>
+                </replica>
+            </shard>
+        </test_cluster>
+    </remote_servers>
+</yandex>

dbms/tests/integration/test_consistent_parts_after_clone_replica/test.py

@@ -0,0 +1,60 @@
+import pytest
+
+from helpers.cluster import ClickHouseCluster
+from helpers.network import PartitionManager
+from helpers.test_tools import assert_eq_with_retry
+
+
+def fill_nodes(nodes, shard):
+    for node in nodes:
+        node.query(
+        '''
+        CREATE DATABASE test;
+        CREATE TABLE test_table(date Date, id UInt32)
+        ENGINE = ReplicatedMergeTree('/clickhouse/tables/test{shard}/replicated', '{replica}')
+        ORDER BY id PARTITION BY toYYYYMM(date) 
+        SETTINGS min_replicated_logs_to_keep=3, max_replicated_logs_to_keep=5, cleanup_delay_period=0, cleanup_delay_period_random_add=0;
+        '''.format(shard=shard, replica=node.name))
+
+
+cluster = ClickHouseCluster(__file__)
+node1 = cluster.add_instance('node1', main_configs=['configs/remote_servers.xml'], with_zookeeper=True)
+node2 = cluster.add_instance('node2', main_configs=['configs/remote_servers.xml'], with_zookeeper=True)
+
+@pytest.fixture(scope="module")
+def start_cluster():
+    try:
+        cluster.start()
+        fill_nodes([node1, node2], 1)
+        yield cluster
+    except Exception as ex:
+        print ex
+    finally:
+        cluster.shutdown()
+
+
+def test_inconsistent_parts_if_drop_while_replica_not_active(start_cluster):
+    with PartitionManager() as pm:
+        # insert into all replicas
+        for i in range(50):
+            node1.query("INSERT INTO test_table VALUES ('2019-08-16', {})".format(i))
+        assert_eq_with_retry(node2, "SELECT count(*) FROM test_table", node1.query("SELECT count(*) FROM test_table"))
+
+        # disable network on the first replica
+        pm.partition_instances(node1, node2)
+        pm.drop_instance_zk_connections(node1)
+
+        # drop all parts on the second replica
+        node2.query_with_retry("ALTER TABLE test_table DROP PARTITION 201908")
+        assert_eq_with_retry(node2, "SELECT count(*) FROM test_table", "0")
+
+        # insert into the second replica
+        # DROP_RANGE will be removed from the replication log and the first replica will be lost
+        for i in range(50):
+            node2.query("INSERT INTO test_table VALUES ('2019-08-16', {})".format(50 + i))
+
+        # the first replica will be cloned from the second
+        pm.heal_all()
+        assert_eq_with_retry(node1, "SELECT count(*) FROM test_table", node2.query("SELECT count(*) FROM test_table"))
+
+