Merge 4b1a383 into a9fbb71

Clinical-Genomics · Apr 12, 2021 · 3fb7ac5 · 3fb7ac5
2 parents a9fbb71 + 4b1a383
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -34,6 +34,7 @@ multiqc: 1.9 -> 1.10.1
 pdfmerger: v1.0
 picardtools: 2.23.4 -> 2.25.0
 preseq: 2.0.3 -> 3.1.2
+rseqc: 3.0.1 -> 4.0.0
 samtools: 1.10-h9402c20_2 -> 1.12=h9aed4be_1
 smncopynumbercaller: 4b2c1ad -> v1.1.1
 star: 2.7.4a -> 2.7.8a

diff --git a/documentation/Setup.md b/documentation/Setup.md
@@ -64,7 +64,7 @@ You can speed up, for instance, the Readonly module by also installing the compa
 - [PLINK] (version: 1.90b3x35)
 - [Preseq] (version: 3.1.2)
 - [Rhocall] (version: 0.5.1)
-- [RSeQC] (version: 3.0.1)
+- [RSeQC] (version: 4.0.0)
 - [rtg-tools] (version: 3.10.1)
 - [Salmon] (version: 0.12.0)
 - [Sambamba] (version: 0.6.8)

diff --git a/t/data/test_data/miptest_install_config.yaml b/t/data/test_data/miptest_install_config.yaml
@@ -158,7 +158,7 @@ container:
       junction_saturation.py:
       read_distribution.py:
       read_duplication.py:
-    uri: docker.io/clinicalgenomics/rseqc:3.0.1
+    uri: quay.io/biocontainers/rseqc:4.0.0--py38h4a8c8d9_1
   rtg-tools:
     executable:
       rtg:

diff --git a/templates/mip_install_config.yaml b/templates/mip_install_config.yaml
@@ -161,7 +161,7 @@ container:
       junction_saturation.py:
       read_distribution.py:
       read_duplication.py:
-    uri: docker.io/clinicalgenomics/rseqc:3.0.1
+    uri: quay.io/biocontainers/rseqc:4.0.0--py38h4a8c8d9_1
   rtg-tools:
     executable:
       rtg: