Test for existance of VIM genes

Clinical-Genomics · Aug 2, 2024 · db83aeb · db83aeb
1 parent 0ed16de
commit db83aeb
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diff --git a/tests/test_scraper.py b/tests/test_scraper.py
@@ -57,5 +57,11 @@ def test_blast_scraping(scraper, testdata_prefix, caplog):
   genes = [h["gene"] for h in hits]
   assert "blaOXA-48" in genes
 
+  has_vim = False
+  for gene in genes:
+      if "VIM" in gene:
+          has_vim = True
+  assert has_vim
+
 def test_alignment_scraping(scraper, init_references, testdata_prefix):
   scraper.scrape_alignment(file_list=glob.glob("{}/*.stats.*".format(testdata_prefix)))