fix path handling

colrev_core/review_dataset.py

@@ -1703,7 +1703,7 @@ def check_propagated_IDs(self, *, prior_id: str, new_id: str) -> list:
 
         text_formats = [".txt", ".csv", ".md", ".bib", ".yaml"]
         notifications = []
-        for root, dirs, files in os.walk(os.getcwd(), topdown=False):
+        for root, dirs, files in os.walk(self.REVIEW_MANAGER.path, topdown=False):
             for name in files:
                 if any((x in name) or (x in root) for x in ignore_patterns):
                     continue

colrev_core/search.py

@@ -270,7 +270,7 @@ def add_source(self, *, query: str) -> None:
                     i += 1
                     filename = filename[: filename.find("_query") + 6] + f"_{i}.bib"
 
-            feed_file_path = Path.cwd() / Path("search") / Path(filename)
+            feed_file_path = self.REVIEW_MANAGER.path / Path(filename)
             assert not feed_file_path.is_file()
 
             # The following must be in line with settings.py/SearchSource
@@ -348,7 +348,7 @@ def update(self, *, selection_str: str) -> None:
                 return
 
         for feed_item in feed_sources:
-            feed_file = Path.cwd() / Path("search") / Path(feed_item.filename)
+            feed_file = self.REVIEW_MANAGER.path / Path(feed_item.filename)
 
             if feed_item.source_name not in self.search_scripts:
                 print(