update migration script #1030

build.xml

@@ -97,6 +97,10 @@
                includeAntRuntime='false'>
             <include name="beast/pkgmgmt/**/**" />
         </javac>
+
+        <copy todir="${build}">
+            <fileset dir="${beast2}/src" includes="**/*.png" />
+        </copy>
 
         <jar jarfile="${build}/dist/launcher.jar">
             <manifest>

scripts/migrate.pl

@@ -354,22 +354,22 @@
 "BactrianUpDownOperator" "beast.base.inference.operator.kernel.BactrianUpDownOperator"
 "LG" "beastclassic.evolution.substitutionmodel.LG"
 beast.inference.PathSampler modelselection.inference.PathSampler
-starbeast3.SpeciesTree starbeast3.tree.SpeciesTree
 starbeast3.SpeciesTreePrior starbeast3.evolution.speciation.SpeciesTreePrior
+starbeast3.SpeciesTree starbeast3.tree.SpeciesTree
 starbeast3.GeneTreeForSpeciesTreeDistribution starbeast3.evolution.speciation.GeneTreeForSpeciesTreeDistribution
 starbeast3.StarBeast3Clock starbeast3.evolution.branchratemodel.StarBeast3Clock
 starbeast3.StarBeastStartState starbeast3.core.StarBeastStartState
 starbeast3.SpeciesTreeLogger starbeast3.core.SpeciesTreeLogger
 starbeast3.GeneTreeLogger beast.base.evolution.TreeWithMetaDataLogger
 beast.base.inference.OperatorScheduleRecalculator starbeast3.core.OperatorScheduleRecalculator
 beast.evolution.tree.RNNIMetric beastlabs.evolution.tree.RNNIMetric
-beast.base.evolution.tree.TreeDistanceLogger beastlabs.evolution.tree.TreeDistanceLogger
+beast.base.evolution.tree.TreeDistanceLogger beastlabs.evolution.tree.TreeDistanceLogger'
 ;
 
 if ($#ARGV < 0) {
 	print "Usage: perl migrate.pl <directory or file>\n";
 	print "If a directory is specified, it recursively attempts to convert java class + xml files from BEAST v2.6.x to v2.7.0\n";
-	print "If a file is specified, only that file is converted.";
+	print "If a file is specified, only that file is converted.\n";
 	exit(0);
 }
 @s = split('\n',$s);