fix potential recalculation issue due to refactoring #834

CompEvol · Aug 8, 2022 · 8fed3ca · 8fed3ca
1 parent 1804b05
commit 8fed3ca
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diff --git a/Dockerfile b/Dockerfile
@@ -31,8 +31,8 @@ RUN chmod 600 /root/.vnc/passwd
 
 # Install BEAGLE
 RUN apt-get update && apt-get install -y build-essential autoconf automake libtool pkg-config
-# use latest release v3.2.1, issue #786
-RUN cd /root && git clone --branch v3.2.1 --depth=1 https://github.com/beagle-dev/beagle-lib.git
+# use latest release v3.1.2, issue #786
+RUN cd /root && git clone --branch v3.1.2 --depth=1 https://github.com/beagle-dev/beagle-lib.git
 RUN cd /root/beagle-lib && ./autogen.sh && ./configure --prefix=/usr/local && make install
 RUN ldconfig
 

diff --git a/src/beast/base/evolution/branchratemodel/UCRelaxedClockModel.java b/src/beast/base/evolution/branchratemodel/UCRelaxedClockModel.java
@@ -17,6 +17,7 @@
 import beast.base.inference.distribution.ParametricDistribution;
 import beast.base.inference.parameter.IntegerParameter;
 import beast.base.inference.parameter.RealParameter;
+import beast.base.inference.util.InputUtil;
 import beast.base.util.Randomizer;
 
 /**
@@ -370,7 +371,7 @@ protected boolean requiresRecalculation() {
         if (rateInput.get() != null && rateInput.get().somethingIsDirty()) {
             return true;
         }
-        if (meanRate instanceof CalculationNode && ((CalculationNode)meanRate).isDirtyCalculation()) {
+        if (InputUtil.isDirty(meanRateInput)) {
             return true;
         }