FOR TESTING PURPOSES ONLY
Assets
3
Allow operator schedule changes in BEAUti
Fix quantile parameterisation of relaxed clocks
Add batch file for Windows command line usage
Improve error messages
Provide better access in API for developers
Assets
11
- Fixes bug in BEAUti so that template of "last" package is recognised
- Makes loganalyser deal with spacees in trace log names
- Adds column to LogAnalyser -oneline output
- Has random local clock fix for unscaled rates
More details are available here:
http://www.beast2.org/2019/08/08/what-is-new-in-v2.6.1.html
Assets
4
Main changes
Robustify application launching and package upgrading (especially for Windows)
Faster BEAUti processing of large number of partitions
Other changes
Make sequenceSimulator less sensitive to taxa ordering
Improved error messages
XML being produced is more standardised
Make help menu extendible to add for example automatic methods section generator
Saves last accessed directory between sessions
Default bounds on BSP pop sizes and random local clock rates updated
Let GuessPatternDialog handle empty fields.
Adding MRCAPriors more robust when multiple alignments share a tree
More complete Nexus parser
For developers
More flexible options for constructing BEAST objects
More access methods to core classes
Added BEASTInterface::notClonable
There are more details for users and developers on the beast2.org website.
Assets
12
- More robust release for Windows that includes JRE
- Fix AppLauncher for OS X
- Robustify start scripts for OS X, Linux
- Implement rate parameterisation for uncorrelated relaxed clock model
- Improved error messages
- Relaxed API giving more access to package developers
- Node.getMetaData() now returns null on key not found
- Pass -Xss arguments through launchers to set stack size
- DOIs point to preferred resolver
- Fix multi-threading issue with parameteric distributions
- Remove posterior ESS from screen log
Assets
8
Add -X flag to all applications, so more memory can be allocated
Fix some OS X with Java 9+ anomalies
More robust OS X CUDA check
More robust launch scripts
Better error reporting
More robust package manager
TreeAnnotator handles taxa that are numbers now
Allow multiple -D arguments to BEAST, allows commas in user defined variables