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[BUG] #313

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xiekunwhy opened this issue Jun 27, 2024 · 1 comment
Open
1 of 2 tasks

[BUG] #313

xiekunwhy opened this issue Jun 27, 2024 · 1 comment
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triage For developers to check

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@xiekunwhy
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Is there an existing issue for this?

  • I have searched the existing issues

Have you loaded the SQANTI3.env conda environment?

  • I have loaded the SQANTI3.env conda environment

Problem description

There is no rbu.mRNA.all.pacbio.gtf.cds.gff file in final output directory.

Code sample

/Bio/User/kxie/software/mambaforge/envs/sqanti3/bin/python /Bio/User/kxie/software/SQANTI3/sqanti3_qc.py --force_id_ignore --isoAnnotLite --cpus 20 --chunks 20 rbu.mRNA.all.pacbio.gtf EVM.all.addname.gtf rbu.fa

Error

image

Anything else?

No response
@xiekunwhy xiekunwhy added the triage For developers to check label Jun 27, 2024
@alexpan00
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Hi @xiekunwhy,

Did you get any error?

Alejandro

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@xiekunwhy @alexpan00