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20 Open 252 Closed
20 Open 252 Closed
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Issues list

[BUG] After running filter, the second column of the filtered gtf file is always pacbio, even if I'm using ONT data. triage For developers to check
#314 opened Jul 17, 2024 by dudududu12138
2 tasks done
[BUG] triage For developers to check
#313 opened Jun 27, 2024 by xiekunwhy
1 of 2 tasks
1
[FEATURE] support gzip'd input fastq files enhancement New feature or request
#312 opened Jun 25, 2024 by nick-youngblut
2 tasks done
default rule filter also filtered out mono-exonic transcripts rules filter SQ3 rules filter related issues
#282 opened Apr 2, 2024 by MengjunWu
2 tasks done
Having output of examples check into git is problematic enhancement New feature or request
#276 opened Mar 24, 2024 by diekhans
2 tasks done
BAM/SAM input option enhancement New feature or request
#274 opened Mar 21, 2024 by carolinamonzo
@TianYuan-Liu
1
The sign of diff_to_TSS and diff_to_TTS seem to be flipped bug Something isn't working
#244 opened Dec 12, 2023 by ryanpe13002
@alexpan00
1
Alternative tools for orf prediction enhancement New feature or request
#239 opened Nov 6, 2023 by kdm9
1
CDS not annotated using isoAnnotLite IsoAnnotLite IsoAnnotLite related issues question Further information is requested
#230 opened Sep 25, 2023 by Ajay-097
8
Dockerfile for SQANTI3/5.1.2 Installation Installation-related issues
#227 opened Sep 14, 2023 by skchronicles
8
SQANTI3_report.pdf generation fails when one or more structural categories are empty enhancement New feature or request QC SQ3 Quality Control related issues
#219 opened Aug 24, 2023 by mkostich
1
Option to write TSV for each report table enhancement New feature or request
#218 opened Aug 24, 2023 by diekhans
2
understanding the dup isoforms in the classification file QC SQ3 Quality Control related issues question Further information is requested
#216 opened Aug 23, 2023 by alexyfyf
2
sqanti hides import errors and makes it hard to debug enhancement New feature or request
#212 opened Aug 12, 2023 by diekhans
Error Generating R Report when missing SC QC SQ3 Quality Control related issues
#202 opened Jul 3, 2023 by athoutam6
6
RTS_stage issue QC SQ3 Quality Control related issues question Further information is requested
#197 opened Jun 1, 2023 by kehming
Provide SQANTI3 as bioconda package enhancement New feature or request Installation Installation-related issues
#180 opened Jan 24, 2023 by caspargross
1
Error in simpleLoess bug Something isn't working QC SQ3 Quality Control related issues
#164 opened Aug 4, 2022 by sum732
3
Default output should not be so verbose enhancement New feature or request
#61 opened May 25, 2021 by SichongP
1
docker image enhancement New feature or request Installation Installation-related issues
#40 opened Jan 28, 2021 by joelnitta
ProTip! no:milestone will show everything without a milestone.