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Edited min_ref_len argument description.
Updated Running SQANTI3 Quality Control (markdown)
Document --ratio_TSS_metric option for v5.2
Add --force_id_ignore warning
Revert d9c10a07b5eda0641d816b30b7ef88315933d24b...f918b658eee9605febc4c60a2859df1cbc7364f3 on Running SQANTI3 Quality Control
Add links to STAR and kallisto
Add information on IsoAnnotLite and --gff3
Edit content table
Improve content of short read subsections
Distribute short read section content into subsections
Edit parallelization section.
Change distribution of detailed sections on optional inputs. Edit and complete polyA and CAGE sections.
Update minimal and additional input descriptions
Updated internal links
Added info about polyA_motif_found_column. CAGE arguments and columns now are in capital letters
Start ordering sections and improve initial descriptions of SQANTI3 QC
Update table of contents
Typo polyA site data format