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crc_dis_main.m
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crc_dis_main.m
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function varargout = crc_dis_main(varargin)
% CRC_DIS_MAIN M-file for crc_dis_main.fig
% CRC_DIS_MAIN, by itself, creates a new CRC_DIS_MAIN or raises the
% existing singleton*.
%
% H = CRC_DIS_MAIN returns the handle to a new CRC_DIS_MAIN or the handle to
% the existing singleton*.
%
% CRC_DIS_MAIN('CALLBACK',hObject,eventData,handles,...) calls the local
% function named CALLBACK in CRC_DIS_MAIN.M with the given input arguments.
%
% CRC_DIS_MAIN('Property','Value',...) creates a new CRC_DIS_MAIN or raises the
% existing singleton*. Starting from the left, property value pairs are
% applied to the GUI before dis_main_OpeningFunction gets called. An
% unrecognized property name or invalid value makes property application
% stop. All inputs are passed to crc_dis_main_OpeningFcn via varargin.
%
% *See GUI Options on GUIDE's Tools menu. Choose "GUI allows only one
% instance to run (singleton)".
%
% See also: GUIDE, GUIDATA, GUIHANDLES
%__________________________________________________________________
% Copyright (C) 2009 Cyclotron Research Centre
% Written by Y. Leclercq & C. Phillips, 2008.
% Modified by J. Schrouff, 2010-...
% And further updated by D. Coppieters, 2012-...
% Cyclotron Research Centre, University of Liege, Belgium
% $Id:$
% Edit the frqabv text to modify the response to help crc_dis_main
% Last Modified by GUIDE v2.5 14-Jan-2011 17:09:43
% Begin initialization code - DO NOT EDIT
gui_Singleton = 1;
gui_State = struct('gui_Name', mfilename, ...
'gui_Singleton', gui_Singleton, ...
'gui_OpeningFcn', @crc_dis_main_OpeningFcn, ...
'gui_OutputFcn', @crc_dis_main_OutputFcn, ...
'gui_LayoutFcn', [] , ...
'gui_Callback', []);
if nargin && ischar(varargin{1})
gui_State.gui_Callback = str2func(varargin{1});
end
if nargout
[varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:});
else
gui_mainfcn(gui_State, varargin{:});
end
% End initialization code - DO NOT EDIT
% --- Executes just before crc_dis_main is made visible.
function crc_dis_main_OpeningFcn(hObject, eventdata, handles, varargin)
% This function has no output args, see OutputFcn.
% hObject handle to figure
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% varargin command line arguments to crc_dis_main (see VARARGIN)
crcdef = crc_get_defaults('one');
set(0,'CurrentFigure',handles.figure1);
warning('off')
% Choose default command line output for crc_dis_main
handles.output = hObject;
handles.file = varargin{1}.file;
handles.figz = 0;
handles.Dmeg = varargin{1}.Dmeg;
if isfield(varargin{1},'showOracle')
handles.showOracle = 1;
else
handles.showOracle = 0;
end
if isfield(varargin{1},'scoresleep')
handles.scoring = 1;
else
handles.scoring = 0;
end
handles.gui_active = 1;
for i=1:numel(handles.Dmeg)
handles.Dmeg{i} = meeg(handles.Dmeg{i});
end
D = handles.Dmeg{1};
% distinct index to make easier to select data by type
handles.index = varargin{1}.index;
handles.indexMEEG = fliplr(intersect(meegchannels(handles.Dmeg{1}),handles.index))';
handles.indnomeeg = setdiff(handles.index, handles.indexMEEG)';
if size(handles.indnomeeg,1)>1
handles.indnomeeg = handles.indnomeeg';
end
if size(handles.indexMEEG,1)>1
handles.indexMEEG = handles.indexMEEG';
end
handles.inddis = [handles.indnomeeg handles.indexMEEG];
% handles.inddis = [handles.index];
handles.indeeg = [meegchannels(D,'EEG') meegchannels(D,'LFP')];
% Default values
set(handles.normalize,'Value',0);
% Take the window size used to score
if handles.scoring % scoring sleep data
if isfield (handles.Dmeg{1},'CRC')
if isfield (handles.Dmeg{1}.CRC,'score')
handles.winsize = handles.Dmeg{1}.CRC.score{3,1};
else
handles.winsize = crc_get_defaults('score.winsize');
end
else
handles.winsize = crc_get_defaults('score.winsize');
end
else % no scoring
handles.winsize = crcdef.winsize;
end
handles.scale = crcdef.scale;
handles.eegscale = [];
handles.eogscale = [];
handles.emgscale = [];
handles.ecgscale = [];
handles.otherscale = [];
handles.lfpscale = [];
handles.megmagscale = [];
handles.megplanarscale = [];
handles.chan = [];
%si ca revient de la détection automatique
handles.artefacteeg = [];
if isfield(handles.Dmeg{1},'CRC')
if isfield (handles.Dmeg{1}.CRC,'artefacteeg')
handles.artefacteeg = handles.Dmeg{1}.CRC.artefacteeg;
end
end
handles.artefact = [];
if isfield(D,'CRC')
if isfield(D.CRC,'DC')
if isfield(D.CRC.DC,'shortartf')
if isfield(D.CRC.DC.shortartf,'total')
handles.artefact = D.CRC.DC.shortartf.total;
end
end
end
end
% badchannels
handles.badchannels = [];
if isfield(D,'CRC')
if isfield(D.CRC,'DC')
if isfield(D.CRC.DC,'badchannels')
if isfield(D.CRC.DC.badchannels,'chan_defaillant')
badchannels_def = D.CRC.DC.badchannels.chan_defaillant;
badchannels_incoh = D.CRC.DC.badchannels.chan_incoherent;
handles.badchannels = union(badchannels_def',badchannels_incoh','rows')';
end
end
end
end
handles.chanlab = meegchannels(D);
if isempty(handles.chanlab)
handles.chanlab = find(or(or(strncmp(chanlabels(D),'F',1),strncmp(chanlabels(D),'C',1)),or(strncmp(chanlabels(D),'O',1),strncmp(chanlabels(D),'P',1))));
end
%Spike detection
%---------------
handles.move = 0;
if isfield(varargin{1},'type') % We come back from the "Event_menu"
handles.type = varargin{1}.type;
else % It's the begining
D = handles.Dmeg{1};
handles.type = {};
if isfield(D,'CRC')
if isfield(D.CRC,'Event')&& ~isempty(events(D)) %changes made
type_sauv = D.CRC.Event;
tp = events(D);
tpt = {tp(:).type};
[goodev int_tpt int_sauv] = intersect(tpt,type_sauv(:,1));
handles.type = type_sauv(int_sauv,:);
else
evs = events(D);
if ~isempty(evs)
valev = {evs(:).value};
type = cell(0);
evm = 1;
if isfield(D.CRC,'score')
nsc = size(D.CRC.score,2);
type = cell(0);
for insc = 1 : nsc
for vv = 1 : length(valev)
if any(strcmpi( {(D.CRC.score{2,insc})},valev{vv}))||strcmpi('Newuser',valev{vv})
type(evm) = {evs(vv).type};
evm = evm + 1;
end
end
end
else
for vv = 1 : length(valev)
if any(strcmpi('Newuser',valev{vv}))
type(evm) = {evs(vv).type};
evm = evm + 1;
end
end
end
tevm = cellstr(unique(char(type(:)),'rows'));
ntevm = size(tevm,1);
if ~isempty(type(:))
handles.type(1:ntevm,1) = tevm;
handles.type(1:ntevm,2) = cellstr('red');
end
end
end
end
end
[path, ~,~] = fileparts([mfilename('fullpath') '.m']);
settings_path = fullfile(path,'/settings.mat');
if exist(settings_path, 'file') == 2,
load(settings_path);
set(handles.validity,'string',['License Validity: ' settings.validity ' UTC.'])
else
set(handles.validity,'string','License Validity: NA')
end
delete(get(handles.manevent,'Children'));
for itp = 1:size(handles.type,1)
uimenu(handles.manevent,'Label', char(handles.type(itp,1)),'Callback',@Define_event)
end
uimenu(handles.manevent,'Label', ...
'New Type','Callback', @newtype_Callback,...
'Separator','on') ;
%--------------------------------------------
%coming back from "detection" or "Event_menu"
%-------------------------------------------
if isfield(varargin{1},'base')
handles.base = varargin{1}.base;
else
handles.base = {};
end
%---------------------------------------------
if isfield(varargin{1},'delmap')
set(handles.delaymap,'visible','on');
set(handles.delaymap,'Value',1);
if isfield(varargin{1}.delmap,'elpos')
handles.delmap.elpos = varargin{1}.delmap.elpos;
end
if isfield(varargin{1}.delmap,'zebris_name')
handles.delmap.zebris_name = varargin{1}.delmap.zebris_name;
end
if isfield(varargin{1}.delmap,'cas')
handles.delmap.cas = varargin{1}.delmap.cas;
end
else
set(handles.delaymap,'visible','off');
set(handles.text25,'visible','off');
set(handles.delaymap,'Value',0);
handles.delmap = [];
end
if isfield(varargin{1},'multcomp') % if comparing multiple files
handles.multcomp = 1;
handles.displevt = 0;
handles.export = 0;
handles.hor_grid = 0;
handles.vert_grid = 0;
set(handles.figure1, 'windowbuttonmotionfcn', '')
%Handles date and hour and slider
handles.date = varargin{1}.dates;
handles.chanset = varargin{1}.chanset;
maxdate = max(max(handles.date));
handles.maxdate = maxdate;
mindate = min(min(handles.date));
handles.mindate = mindate;
mindatevec = datevec(min(min(handles.date)));
diffe = maxdate-mindate;
diffvec = datevec(diffe);
if diffvec(3)+(diffvec(2)-1)*30+(diffvec(1)-1)*365 > 2
handles.offset = 0;
else
handles.offset = mindatevec(4) * 60^2 + mindatevec(5)*60 + mindatevec(6);
end
handles.maxx = diffvec(4)*60^2+diffvec(5)*60+diffvec(6);
set(handles.slider1,'Value',1/handles.winsize);
set(handles.slider1,'Max',handles.maxx-handles.winsize);
set(handles.slider1,'Min',1/handles.winsize);
set(handles.slider1,'SliderStep',[handles.winsize/(handles.maxx) 0.1]);
set(handles.totaltime,'String',['/ ' num2str(handles.maxx)]);
set(handles.currenttime,'String',num2str(round(handles.winsize/2)));
set(handles.totalpage,'String',['/ ' num2str(ceil(handles.maxx/handles.winsize))]);
set(handles.currentpage,'String',num2str(1));
%disables channel slider
set(handles.Chanslider,'enable','off')
%handles popupmenustring using common channels
popupmenustring = handles.chanset;
if sum(strcmp(handles.chanset,'REF2'))
popupmenustring = [popupmenustring 'MEAN OF REF'];
end
%handles visibility of different options
set(handles.Score,'enable','off','visible','off')
set(handles.pushbutton1,'enable','off','visible','off')
set(handles.pushbutton2,'enable','off','visible','off')
set(handles.popupmenu10,'enable','off','visible','off')
set(handles.popupmenu11,'enable','off','visible','off')
set(handles.radiobutton1,'enable','off','visible','off')
set(handles.pushbutton5,'enable','off','visible','off')
set(handles.pushbutton6,'enable','off','visible','off')
set(handles.pushbutton7,'enable','off','visible','off')
set(handles.NbreChan,'enable','off','visible','off')
set(handles.uipanel6,'visible','off')
set(handles.text22,'visible','off')
set(handles.text23,'visible','off')
set(handles.NbrechanTxt,'visible','off')
set(handles.NbreChan,'Value',1)
set(handles.Cmp_Pwr_Sp_All,'enable','on','visible','on')
set(handles.multfil,'enable','on')
set(handles.multnames,'enable','on')
set(handles.multchan,'enable','on')
set(handles.multother,'enable','on')
set(handles.multclose,'enable','on')
set(handles.axes4,'visible','off')
set(handles.addundefart,'visible','off')
set(handles.addspecart,'visible','off')
set(handles.addaro,'visible','off')
set(handles.addeoi,'visible','off')
set(handles.FPL,'visible','off')
set(handles.OPL,'visible','off')
set(handles.Delart,'visible','off')
set(handles.Delaro,'visible','off')
set(handles.Del_eoi,'visible','off')
set(handles.Delartonlyone,'visible','off')
%set(handles.Detection,'visible','off')
set(handles.addonlyone,'visible','off')
% set(handles.others,'enable','off','visible','off')
% set(handles.com,'enable','off','visible','off')
set(handles.manevent,'enable','off','visible','off')
set(handles.event_menu,'enable','off')
set(handles.counterspect,'enable','off','visible','off')
for ii = 1 : size(handles.chanset,2)
handles.multchanlab{ii} = uimenu(handles.multchan,'Label',...
char(handles.chanset{ii}),'Callback',...
{@Chantodisp});
if ii == handles.index
set(handles.multchanlab{ii},'Checked','on')
handles.Chantodis = ii;
end
end
set(handles.figure1,'name','Multiple files comparison')
else %if only one file to display
%set(handles.Detection,'visible','off') %Not ready yet
handles.multcomp=0;
set(handles.axes5,'visible','on');
set(handles.axes4,'visible','on');
%handles date and hour and slider
if isfield(handles.Dmeg{1},'info')
if isfield(handles.Dmeg{1}.info,'hour')
handles.offset = handles.Dmeg{1}.info.hour(1) * 60^2 + ...
handles.Dmeg{1}.info.hour(2)*60 + ...
handles.Dmeg{1}.info.hour(3);
end
end
set(handles.slider1,...
'Max', nsamples(handles.Dmeg{1})/fsample(handles.Dmeg{1})-handles.winsize/2,...
'Value',0,...
'Min',0)
try
set(handles.slider1,'SliderStep',[(handles.winsize)/(nsamples(handles.Dmeg{1})/fsample(handles.Dmeg{1})-handles.winsize/2) 0.1])
end
set(handles.totaltime,'String',['/ ' ...
num2str(round(nsamples(handles.Dmeg{1})/fsample(handles.Dmeg{1})))]);
set(handles.currenttime,'String',num2str(round(handles.winsize/2)));
%new index for page
set(handles.totalpage,'String',['/ ' ...
num2str(ceil((nsamples(handles.Dmeg{1})/fsample(handles.Dmeg{1}))/handles.winsize))]);
set(handles.currentpage,'String',num2str(1));
% Number of channels displayed
Nchdisp = str2double(get(handles.NbreChan,'String'));
set(handles.NbreChan,'String', num2str(min(Nchdisp, length(handles.indexMEEG) + length(handles.indnomeeg))))
Nchdisp = str2double(get(handles.NbreChan,'String'));
totind = numel(handles.index); %length(handles.indexMEEG) + length(handles.indnomeeg);
set(handles.Chanslider,...
'Min',1,...
'Max',totind - Nchdisp+1,...
'Value',1,...
'SliderStep', [Nchdisp/totind Nchdisp/totind])
popupmenustring = chanlabels(handles.Dmeg{1}) ;
if sum(strcmp(chanlabels(handles.Dmeg{1}),'REF2'))
popupmenustring = [popupmenustring 'MEAN OF REF'];
end
if and(sum(strcmp(chanlabels(handles.Dmeg{1}),'M1')), ...
sum(strcmp(chanlabels(handles.Dmeg{1}),'M2')))
popupmenustring = [popupmenustring 'M1-M2'];
end
set(handles.figure1,'name',handles.file{1})
end
% Define filter according to the smallest sampling frequency
handles.filter.other = crcdef.filtEEG;
filt=zeros(size(handles.Dmeg,2),1);
for i=1:size(handles.Dmeg,2)
filt(i) = fsample(handles.Dmeg{i})/2;
end
[filt,posf] = max(filt);
% Adjust filter order to sampling rate, low at 5kHz (EEG-fMRI data)
if filt>2000
forder = 1;
else
forder = 3;
end
handles.minsamp = posf;
handles.filter.EMG = [crcdef.filtEMG(1) ...
min(crcdef.filtEMG(2),filt/2)];
handles.filter.EOG = crcdef.filtEOG;
[B,A] = butter(forder,[handles.filter.EOG(1)/(fsample(handles.Dmeg{posf})/2),...
handles.filter.EOG(2)/(fsample(handles.Dmeg{posf})/2)],'pass');
handles.filter.coeffEOG=[B;A];
[B,A] = butter(forder,[handles.filter.EMG(1)/(fsample(handles.Dmeg{posf})/2),...
handles.filter.EMG(2)/(fsample(handles.Dmeg{posf})/2)],'pass');
handles.filter.coeffEMG=[B;A];
[B,A] = butter(forder,[handles.filter.other(1)/(fsample(handles.Dmeg{posf})/2),...
handles.filter.other(2)/(fsample(handles.Dmeg{posf})/2)],'pass');
handles.filter.coeffother=[B;A];
set(handles.frqabv,'String',num2str(handles.filter.other(2)));
set(handles.upemg,'String',num2str(handles.filter.EMG(2)));
% popupmenu setting
popupmenustring = [popupmenustring 'REF1'];
set(handles.EEGpopmenu,...
'String',popupmenustring,...
'Value',length(popupmenustring))
set(handles.otherpopmenu,...
'String',popupmenustring,...
'Value',length(popupmenustring))
popupmenustring = [popupmenustring 'BIPOLAR'];
set(handles.EOGpopmenu,...
'String',popupmenustring,...
'Value',length(popupmenustring))
set(handles.EMGpopmenu,...
'String',popupmenustring,...
'Value',length(popupmenustring))
% Menu to display FFT for each window according to the channel selected
popmenustring = chanlabels(handles.Dmeg{1}, handles.inddis);
set(handles.fftchan, 'String', popmenustring,'Value', 1,'Visible','off')
load('CRC_electrodes.mat');
handles.names = names;
handles.crc_types = crc_types;
handles.pos = pos';
%events display, only if one file
if ~handles.multcomp
handles.displevt = 0;
pmstring = [{'All'}];
evt = events(handles.Dmeg{1});
evt = evt(:);
if iscell(evt)
evt = cell2mat(evt);
disp(['Warning: data not continuous (trials of 1s), only first epoch showed'])
end
if ~isempty(evt)
for i = 1:max(size(evt,2),size(evt,1))
if ~isempty(evt(i)) && ~any(strcmpi(evt(i).type, pmstring)) &&...
~isempty(evt(i).time)
pmstring = [pmstring, {evt(i).type}];
end
end
end
set(handles.popupmenu10,...
'String',pmstring,...
'Value',length(pmstring))
pmstring=[{'All'}, {'Number of event'}];
if ~isempty(evt)
for i = 1:size(evt,2)
if ~isempty(evt(i)) && isnumeric(evt(i).value)
evt(i).value = num2str(evt(i).value);
end
if ~isempty(evt(i)) && ~any(strcmpi(evt(i).value, pmstring)) &&...
~isempty(evt(i).time)
pmstring = [pmstring, {evt(i).value}];
end
end
end
set(handles.popupmenu11,...
'String',pmstring,...
'Value',length(pmstring))
handles.evt = evt;
handles.chostype = 1:max(size(evt,2),size(evt,1));
handles.chosevt = 1:max(size(evt,2),size(evt,1));
if isfield(handles.Dmeg{1},'CRC') && ...
isfield(handles.Dmeg{1}.CRC,'lastdisp')
slidval=handles.Dmeg{1}.CRC.lastdisp;
set(handles.slider1,'Value',slidval)
end
set(handles.figure1,'MenuBar','figure')
%Scoring information if only one file
handles.vert_grid = 0;
handles.hor_grid = 0;
handles.export = 0;
set(handles.figure1, 'windowbuttonmotionfcn', @update_powerspect)
if handles.scoring
Score_Callback(hObject,eventdata,handles)
handles = guidata(hObject);
else
handles.score = cell(8,1);
handles.score{4,1} = [1/fsample(handles.Dmeg{1}) ...
nsamples(handles.Dmeg{1})/fsample(handles.Dmeg{1})];
handles.score{2,1} = 'Newuser';
handles.score{1,1} = [0/0, 0/0];
set(handles.figure1,'CurrentAxes',handles.axes4)
%Select the scorer according to the last used
if isfield(varargin{1},'user')
handles.currentscore = varargin{1}.user;
else
handles.currentscore = 1;
end
crc_hypnoplot(handles.axes4, ...
handles,handles.winsize)
set(handles.figure1,'CurrentAxes',handles.axes1)
set(handles.addundefart,'visible','off')
set(handles.addonlyone,'visible','off')
set(handles.addspecart,'visible','off')
set(handles.addaro,'visible','off')
set(handles.addeoi,'visible','off')
set(handles.FPL,'visible','off')
set(handles.OPL,'visible','off')
set(handles.Delart,'visible','off')
set(handles.Delartonlyone,'visible','off')
set(handles.Delaro,'visible','off')
set(handles.Del_eoi,'visible','off')
set(handles.manevent,'visible','off') %To make visible to put events manually
%set(handles.Detection,'visible','on')
end
end
D = handles.Dmeg{1};
if ~isfield(D,'info')
D.info = []; %in case field other empty set info to allow
end %further dot name structure assignments
if ~isfield (D,'CRC')
D.CRC = [];
end
% initalize the field 'goodevents' in D.CRC and, if spindle or slow wave
% detection was performed, retrieve which events were marked as bad.
aevt = events(D);
D.CRC.goodevents = ones(1,numel(aevt));
if iscell(aevt)
aevt = cell2mat(aevt);
end
if ~isempty(aevt)
evtype = [{aevt(:).type}];
if isfield(D.CRC,'SW')
indsw = [];
for j = 1 : size(evtype,2)
if ~isempty(strfind(evtype{j},'SW'))|| ~isempty(strfind(evtype{j},'delta'))
indsw = [indsw,j];
end
end
for i = 1 : size(D.CRC.SW.SW,2)
a = [aevt(indsw).time];
[d1,b] = sort(abs(round(a)-round([D.CRC.SW.SW(i).negmax]/1000)));
if ~isfield(D.CRC.SW.SW(i),'good')
D.CRC.SW.SW(i).good=1;
end
D.CRC.goodevents(indsw(b(1))) = D.CRC.SW.SW(i).good;
end
end
if isfield(D.CRC,'spindles')
indsp = [];
for j = 1 : size(evtype,2)
if ~isempty(strfind(evtype{j},'SP'))
indsp = [indsp,j];
end
end
for i = 1 : size(D.CRC.spindles.bounds,1)
a = [aevt(indsp).time];
[d1,b] = sort(abs(round(a*10)-round(D.CRC.spindles.bounds(i,1)/fsample(handles.Dmeg{1})*10)));
if ~isfield(D.CRC.spindles,'good')
D.CRC.spindles.good(i)=1;
end
D.CRC.goodevents(indsp(b(1))) = D.CRC.spindles.good(i);
end
end
end
handles.Dmeg{1} = D;
save(D);
% to display the main plot
mainplot(handles)
% Update handles structure
guidata(hObject, handles);
% UIWAIT makes crc_dis_main wait for user response (see UIRESUME)
% uiwait(handles.figure1);
% --- Outputs from this function are returned to the command line.
function varargout = crc_dis_main_OutputFcn(hObject, eventdata, handles)
% varargout cell array for returning output args (see VARARGOUT);
% hObject handle to figure
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Get default command line output from handles structure
varargout{1} = handles.output;
% --- Executes on slider movement.
function slider1_Callback(hObject, eventdata, handles)
% hObject handle to slider1 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hints: get(hObject,'Value') returns position of slider
% get(hObject,'Min') and get(hObject,'Max') to determine range of slider
handles.displevt=0;
%removed and then readd%%%%%%%%
if isfield(handles,'scoring') & handles.scoring
set(handles.figure1,'CurrentAxes',handles.axes4)
crc_hypnoplot(handles.axes4, ...
handles,handles.score{3,handles.currentscore})
set(handles.figure1,'CurrentAxes',handles.axes1)
end
%%%%%%%%%%%%%%%%%
mainplot(handles)
% Update handles structure
guidata(hObject, handles);
function confslider_Callback(hObject, eventdata, handles)
value = get(hObject,'Value');
set(handles.conftext,'String',sprintf('Confidence Threshold %.1f',value));
%removed and then readd%%%%%%%%
if isfield(handles,'scoring') & handles.scoring
set(handles.figure1,'CurrentAxes',handles.axes4)
crc_hypnoplot(handles.axes4, ...
handles,handles.score{3,handles.currentscore})
set(handles.figure1,'CurrentAxes',handles.axes1)
end
mainplot(handles)
guidata(hObject, handles);
function confslider_CreateFcn(hObject, eventdata, handles)
set(hObject,'Value',1.5);
%set(handles.conftext,'String','Confidence Threshold: 1.5');
% --- Executes during object creation, after setting all properties.
function slider1_CreateFcn(hObject, eventdata, handles)
% hObject handle to slider1 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% Hint: slider controls usually have a light gray background.
if isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor',[.9 .9 .9]);
end
%Editing the window size
function edit1_Callback(hObject, eventdata, handles)
% hObject handle to edit1 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hints: get(hObject,'String') returns contents of edit1 as text
% str2double(get(hObject,'String')) returns contents of edit1 as a double
if handles.multcomp
handles.winsize = min(str2double(get(hObject,'String')),handles.maxx);
maxiwin = handles.maxx-handles.winsize;
miniwin = 1/handles.winsize;
else
handles.winsize = min(str2double(get(hObject,'String')), ...
round(nsamples(handles.Dmeg{1})/(2*fsample(handles.Dmeg{1}))));
maxiwin = nsamples(handles.Dmeg{1})/ ...
fsample(handles.Dmeg{1})-handles.winsize;
miniwin = 1/fsample(handles.Dmeg{1});
end
set(handles.edit1,'String',num2str(handles.winsize));
set(handles.slider1,'Max',maxiwin)
set(handles.slider1,'Min',miniwin)
set(handles.slider1,'SliderStep',[handles.winsize/maxiwin 0.1])
set(handles.totalpage,'String',['/ ' ...
num2str(ceil((nsamples(handles.Dmeg{1})/fsample(handles.Dmeg{1}))/handles.winsize))]);
mainplot(handles)
% Update handles structure
guidata(hObject, handles);
% --- Executes during object creation, after setting all properties.
function edit1_CreateFcn(hObject, eventdata, handles)
% hObject handle to edit1 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% Hint: edit controls usually have a white background on Windows.
% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end
%editing the scale
function edit2_Callback(hObject, eventdata, handles)
% hObject handle to edit2 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hints: get(hObject,'String') returns contents of edit2 as text
% str2double(get(hObject,'String')) returns contents of edit2 as a double
if not(str2double(get(hObject,'String'))>0)&& not(str2double(get(hObject,'String'))<0)
set(handles.edit2,'String',num2str(handles.scale));
else
handles.scale=str2double(get(hObject,'String'));
end
% Update handles structure
guidata(hObject, handles);
mainplot(handles)
if handles.multcomp
i = length(handles.Dmeg);
else
Chanslidval = get(handles.Chanslider,'Value');
slidpos = Chanslidval-rem(Chanslidval,1);
NbreChandisp = str2double(get(handles.NbreChan,'String'));
i = min(length(handles.indexMEEG) + length(handles.indnomeeg),NbreChandisp);
end
ylim([0 handles.scale*(i+1)]);
set(handles.axes1,'YTick',[handles.scale/2:handles.scale/2:i*handles.scale+handles.scale/2]);
ylabels=[num2str(round(handles.scale/2))];
for j=1:i
if handles.multcomp
ylabels=[ylabels {num2str(j)}];
else
ylabels=[ylabels chanlabels(handles.Dmeg{1},handles.index(j))];
end
ylabels=[ylabels num2str(round(handles.scale/2))];
end
set(handles.axes1,'YTickLabel',ylabels);
% --- Executes during object creation, after setting all properties.
function edit2_CreateFcn(hObject, eventdata, handles)
% hObject handle to edit2 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% Hint: edit controls usually have a white background on Windows.
% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end
%Push the 'back to channel selection' button
% --- Executes on button press in pushbutton1.
function pushbutton1_Callback(hObject, eventdata, handles)
% hObject handle to pushbutton1 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
flags.index = handles.index;
flags.Dmeg = handles.Dmeg;
flags.file = handles.file;
dis_selchan(flags);
delete(handles.figure1);
try
close(handles.figz)
end
%Editing the 'current time' field
function currenttime_Callback(hObject, eventdata, handles)
% hObject handle to currenttime (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hints: get(hObject,'String') returns contents of currenttime as text
% str2double(get(hObject,'String')) returns contents of currenttime as a double
i=handles.minsamp;
slidval = str2double(get(hObject,'String')); % str2double is faster than str2num
slidval = max(slidval - handles.winsize/2,1/fsample(handles.Dmeg{i}));
if handles.multcomp
maxiwin=handles.maxx-handles.winsize;
else
maxiwin=nsamples(handles.Dmeg{1})/fsample(handles.Dmeg{1})-handles.winsize;
end
slidval = min(slidval,maxiwin);
set(handles.slider1,'Value',slidval)
%Remove and then readd...to be checked
if handles.scoring
set(handles.figure1,'CurrentAxes',handles.axes4)
crc_hypnoplot(handles.axes4, ...
handles,handles.score{3,handles.currentscore})
set(handles.figure1,'CurrentAxes',handles.axes1)
end
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
mainplot(handles)
% --- Executes during object creation, after setting all properties.
function currenttime_CreateFcn(hObject, eventdata, handles)
% hObject handle to currenttime (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% Hint: edit controls usually have a white background on Windows.
% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end
%Editing the 'current time' field
function currentpage_Callback(hObject, eventdata, handles)
% hObject handle to currenttime (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hints: get(hObject,'String') returns contents of currenttime as text
% str2double(get(hObject,'String')) returns contents of currenttime as a double
i=handles.minsamp;
pageval = floor(str2double(get(hObject,'String'))); % str2double is faster than str2num
pageval = max(pageval,1);
if handles.multcomp
maxiwin=floor((handles.maxx-handles.winsize)/handles.winsize);
else
maxiwin=ceil((nsamples(handles.Dmeg{1})/fsample(handles.Dmeg{1}))/handles.winsize);
end
pageval = min(pageval,maxiwin);
slidval = max((pageval-1)*handles.winsize,handles.winsize/2);
set(handles.slider1,'Value',slidval)
if handles.scoring
set(handles.figure1,'CurrentAxes',handles.axes4)
crc_hypnoplot(handles.axes4, ...
handles,handles.score{3,handles.currentscore})
set(handles.figure1,'CurrentAxes',handles.axes1)
end
mainplot(handles)
% To view another file
% --- Executes on button press in pushbutton2.
function pushbutton2_Callback(hObject, eventdata, handles)
% hObject handle to pushbutton2 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
dis_selchan;
delete(handles.figure1);
try
close(handles.figz)
end
%--------------------------------------------------------------------------
%Filters for the EEG, EOG or EMG signals-----------------------------------
%--------------------------------------------------------------------------
% Edit the lowpass filter cutoff of EEG
function frqabv_Callback(hObject, eventdata, handles)
% hObject handle to frqabv (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hints: get(hObject,'String') returns contents of frqabv as text
% str2double(get(hObject,'String')) returns contents of frqabv as a double
frbe = str2double(get(hObject,'String'));
i = handles.minsamp;
if not(isnan(frbe)) && length(frbe)==1
if frbe>fsample(handles.Dmeg{i})/2*.99
handles.filter.other(2) = fsample(handles.Dmeg{i})/2*.99;
set(hObject,'String',num2str(fsample(handles.Dmeg{i})/2));
else
handles.filter.other(2) = frbe;
end
else
beep
set(hObject,'String',num2str(handles.filter.other(2)))
return
end
if fsample(handles.Dmeg{i})>1500
forder = 1;
else
forder = 3;
end
[B,A] = butter(forder,[handles.filter.other(1)/(fsample(handles.Dmeg{i})/2),...
handles.filter.other(2)/(fsample(handles.Dmeg{i})/2)],'pass');
handles.filter.coeffother=[B;A];
% Plot
mainplot(handles)
% Update handles structure
guidata(hObject, handles);
% --- Executes during object creation, after setting all properties.
function frqabv_CreateFcn(hObject, eventdata, handles)
% hObject handle to frqabv (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% Hint: edit controls usually have a white background on Windows.
% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end
function settings_Callback(hObject, eventdata, handles)
% Update handles structure
handles.gui_active = 0;
guidata(hObject, handles);
h = crc_z3score_settings();
uiwait(h);
handles.gui_active = 1;
[path, ~,~] = fileparts([mfilename('fullpath') '.m']);
settings_path = fullfile(path,'/settings.mat');
if exist(settings_path, 'file') == 2,
load(settings_path);
set(handles.validity,'string',['License Validity: ' settings.validity ' UTC.'])
else
set(handles.validity,'string','License Validity: NA')
end
guidata(hObject, handles);
function gen_report_Callback(hObject, eventdata, handles)
handles.gui_active = 0;
guidata(hObject, handles);
flags.Dmeg=handles.Dmeg;
flags.file=handles.file;
flags.scoresleep=1;
flags.index = handles.index;
flags.currentscore = handles.currentscore;
crc_z3score_report(handles.Dmeg{1}, flags);
close(handles.figure1);
return
function autoscore_Callback(hObject, eventdata, handles)
handles.gui_active = 0;
guidata(hObject, handles);
flags.Dmeg=handles.Dmeg;
flags.file=handles.file;
flags.scoresleep=1;
flags.index = handles.index;
crc_z3score_score(handles.Dmeg{1}, flags);
close(handles.figure1);
return
%Edit the highpass filter cutoff
function frqblw_Callback(hObject, eventdata, handles)
% hObject handle to frqblw (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hints: get(hObject,'String') returns contents of frqblw as text
% str2double(get(hObject,'String')) returns contents of frqblw as a double
frbe = str2double(get(hObject,'String'));
i = handles.minsamp;
if not(isnan(frbe)) && length(frbe)==1
if frbe<0.0001
handles.filter.other(1)=0.0001;
set(hObject,'String',num2str(0.0001));
else
handles.filter.other(1) = frbe;
end
else
beep
set(hObject,'String',num2str(handles.frqbelow))