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Version 1.0.3 #209

Merged
merged 62 commits into from
Oct 25, 2021
Merged

Version 1.0.3 #209

merged 62 commits into from
Oct 25, 2021

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ryanccarelli
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@ryanccarelli ryanccarelli commented Oct 25, 2021 •
edited by jacob-rosenthal

Version 1.0.3 release adds:

MohamedOmar2020 and others added 30 commits August 2, 2021 17:46
@MohamedOmar2020
added HistogramEqualization
aca6307
@MohamedOmar2020
minor
328d553
@MohamedOmar2020
minor
94b11dd
@MohamedOmar2020
ss
d5ed213
@MohamedOmar2020
Merge branch 'dev' of https://github.com/Dana-Farber-AIOS/pathml into…
0c2eb02 
… dev

'ss'
@MohamedOmar2020
Merge branch 'dev' of https://github.com/Dana-Farber-AIOS/pathml into…
f0df22a 
… dev

"ss"
@MohamedOmar2020
CODEX notebook
1c23525
@MohamedOmar2020
Merge branch 'dev' of https://github.com/Dana-Farber-AIOS/pathml into…
ddfa9dd 
… dev

'aa'
@MohamedOmar2020
rm CODEX notebook
4b743fd
@MohamedOmar2020
CODEX notebook
6f579b1
@MohamedOmar2020
CODEX notebook
57905dc
@MohamedOmar2020
modified process_adata func
8c434c5
@jacob-rosenthal
Merge branch 'master' into unpin-dependencies
a30fccd
@jacob-rosenthal
Merge branch 'bugfixes' into ml_quickstart
a0cc4a5
@jacob-rosenthal
Merge branch 'dev' into ml_quickstart
bada421
@jacob-rosenthal
Merge branch 'master' into ml_quickstart
722f38c
@jacob-rosenthal
Merge branch 'master' into ml_quickstart
a70d253
@jacob-rosenthal
h5path dataloader implementation
05b6c75
@jacob-rosenthal
add TileDataset and tests
42e26aa
@jacob-rosenthal
move TileDataset to ml module
9bbcea4
@jacob-rosenthal
add documentation for PyTorch dataloaders
e84b0e2
@jacob-rosenthal
revert change that broke tests
f04c561
@jacob-rosenthal
fix imports
bb442a5
@jacob-rosenthal
remove old tile dataset implementation and tests
aef0399
@jacob-rosenthal
trigger CI suite on push event as well as PRs
83f9eea
@jacob-rosenthal
Merge pull request #202 from Dana-Farber-AIOS/gh-actions-config
062c140 
Fix continuous integration configuration
@jacob-rosenthal
Update README.md
1fe89b3 
Specify branch=dev for test status badge in README
@jacob-rosenthal
minor edits from code review
62598a4
@ryanccarelli
clean codex notebook
682d6d0
@ryanccarelli
add transform imports to init, fix import in tests
a71784d
jacob-rosenthal and others added 24 commits October 6, 2021 23:41
@jacob-rosenthal
add two example vignettes
570a558
@jacob-rosenthal
WIP vignettes
8e683cb
@jacob-rosenthal
run IF vignette
202d62d
@MohamedOmar2020
Merge branch 'dev' of https://github.com/Dana-Farber-AIOS/pathml into…
732870f 
… dev_mo

"merge"
@MohamedOmar2020
Merge branch 'dev_mo' of https://github.com/MohamedOmar2020/pathml-1 …
8ff1e17 
…into dev_mo

"merge"
@MohamedOmar2020
add new transforms to documentation
dba79f9
@jacob-rosenthal
rerun IF vignette
7904010
@MohamedOmar2020
fix testing
72c8833
@jacob-rosenthal
fix small bug
125490e
@jacob-rosenthal
update example vignettes
6174275
@MohamedOmar2020
fix testing
82337fa
@jacob-rosenthal
Merge pull request #203 from Dana-Farber-AIOS/manuscript-vignettes
7d131e3 
Manuscript vignettes
@jacob-rosenthal
Add a bug report template
4166584
@ryanccarelli
Merge pull request #204 from Dana-Farber-AIOS/issue-template
4bec58d 
Add a bug report template
@jacob-rosenthal
add codex example and make minor changes to documentation
29d8440
@jacob-rosenthal
Merge pull request #167 from MohamedOmar2020/dev_mo
98bc21c 
CODEX notebook
@ryanccarelli
add paper reference to readme
4cea2c3
@ryanccarelli
fix spacing
2b3b2a0
@jacob-rosenthal
update docs
ab408b2
@jacob-rosenthal
clean up docs
29a20c6
@ryanccarelli
Merge pull request #207 from Dana-Farber-AIOS/update_docs
a0d0670 
Update docs
@jacob-rosenthal
Merge pull request #206 from Dana-Farber-AIOS/dev-cite
0f7d79d 
add paper reference to readme
@ryanccarelli
increment version number
e305487
@ryanccarelli
Merge pull request #208 from Dana-Farber-AIOS/dev-docs
a1212b4 
increment version number
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codecov-commenter commented Oct 25, 2021 •
edited

Codecov Report

❗ No coverage uploaded for pull request base (master@6755a6a). Click here to learn what that means.
The diff coverage is n/a.

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@@            Coverage Diff            @@
##             master     #209   +/-   ##
=========================================
  Coverage          ?   85.29%           
=========================================
  Files             ?       25           
  Lines             ?     2529           
  Branches          ?        0           
=========================================
  Hits              ?     2157           
  Misses            ?      372           
  Partials          ?        0

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jacob-rosenthal
jacob-rosenthal approved these changes Oct 25, 2021
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Lots of improvements! Great work @ryanccarelli and @MohamedOmar2020 !!

@jacob-rosenthal jacob-rosenthal merged commit 503f028 into master Oct 25, 2021
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