[nf, insecure, do not use] chmod abuse

vcf-to-gds/vcf-to-gds.wdl

@@ -66,25 +66,22 @@ task unique_variant_id {
 		# Symlinks would be preferable, but they do not work on GCS
 		# This is known as the twice-localized workaround
 		#echo "Twice-localized workaround: Copying GDS inputs into the workdir"
-		ls -lha .
-		echo "-------------------"
-		echo "-------------------"
-		ls -lha ../*
-		echo "-------------------"
-		echo "-------------------"
-		ls -lha ../*/*
-		echo "-------------------"
-		echo "-------------------"
+
 		BASH_FILES=(~{sep=" " gdss})
 
 		for BASH_FILE in ${BASH_FILES[@]};
 		do
+			echo "attempting to ls"
+			ls -lha ${BASH_FILE}
+			echo "attempting to ln"
 			ln -s ${BASH_FILE} .
 		done
 
+		echo "attempting to ls one last time"
 		ls -lha
-		echo "-------------------"
-		echo "-------------------"
+
+		#echo "horribly abusing chmod"
+		#chmod -R 777 *
 
 		echo "Generating config file"
 		python << CODE