Skip to content

Issues: DataBiosphere/analysis_pipeline_WDL

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

13 Open 36 Closed
13 Open 36 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Reorganize test/truth data
#87 opened Jul 29, 2022 by aofarrel
2 of 7 tasks
1
[assoc-agg] Further improve disk size estimation for prepare segments task enhancement New feature or request terra-only problem Only affects Terra users (or other GCS)
#85 opened Jul 22, 2022 by aofarrel
[assoc-agg] Does CWL still have weirdness with chrX? what is that weirdness anyway?
#83 opened Jul 6, 2022 by aofarrel
[assoc-agg] Implement dot product scatter enhancement New feature or request
#77 opened Jun 17, 2022 by aofarrel
@aofarrel
Beef up default runtime args terra-only problem Only affects Terra users (or other GCS)
#75 opened Jun 16, 2022 by aofarrel
@aofarrel
1
[assoc-agg] weight_chr2.RData is both equivalent and not equivalent to its checker file CWL-WDL divergence help wanted Extra attention is needed probably a nitpick
#70 opened Feb 8, 2022 by aofarrel
1KG_phase3_subset_chrX.gds not equal in its two locations probably a nitpick
#64 opened Jan 10, 2022 by aofarrel
[assoc-agg] Are chromosomes put in numeric order in CWL plot task? CWL-WDL divergence enhancement New feature or request
#62 opened Jan 6, 2022 by aofarrel
@aofarrel
[king] md5 mismatch for 2/3 outputs CWL-WDL divergence probably a nitpick wontfix This will not be worked on
#51 opened Sep 7, 2021 by avani-k
@avani-k
1
Add parameter_meta to all workflows enhancement New feature or request
#39 opened Jul 21, 2021 by aofarrel
@aofarrel
[null model] Conditional + inverse normal results in md5 mismatch CWL-WDL divergence help wanted Extra attention is needed wontfix This will not be worked on
#31 opened Jul 6, 2021 by aofarrel
3
[ld prune] ld_pruning task is hardcoded to not work on chrX help wanted Extra attention is needed
#8 opened May 1, 2021 by aofarrel
4
The Twice-Localized Workaround Cromwell limitation? May be a limitation of how Cromwell works CWL-WDL divergence GCS limitation? May be a limitation of how GCS works wontfix This will not be worked on
#2 opened Apr 27, 2021 by aofarrel
6
ProTip! no:milestone will show everything without a milestone.