Resolve all Job Manager HIGHs & update docs [BW-752] (#729)

README.md

@@ -8,17 +8,21 @@
 [![Github](https://img.shields.io/badge/Docker%20Image-dsub%20shim%20API-blue.svg?style=flat-square)](https://cloud.docker.com/u/databiosphere/repository/docker/databiosphere/job-manager-api-dsub)
 [![Github](https://img.shields.io/badge/Docker%20Image-cromwell%20shim%20API-blue.svg?style=flat-square)](https://cloud.docker.com/u/databiosphere/repository/docker/databiosphere/job-manager-api-cromwell)
 
+## Lifecycle notice
+
+Job Manager is in maintenance mode and is not recommended for new projects.
+
+dsub support is deprecated and will be removed in a future release.
+
+The last release of Job Manager to support dsub without compromise is [1.5.7](https://github.com/DataBiosphere/job-manager/releases/tag/v1.5.7).
+
 ## User facing documentation
 
 Welcome to the Job Manager repository! If you're a developer you're in the right place.
 
 However, if you just want to try out or deploy Job Manager, you will probably find our user and deployment focused content in
 our ReadTheDocs pages: https://data-biosphere-job-manager.readthedocs.io/en/latest/
 
-### Try it out, NOW!
-
-The easiest way to try out Job Manager is to use the [getting started script](https://data-biosphere-job-manager.readthedocs.io/en/stable/GettingStarted/QuickStart)
-
 ## Welcome
 
 See the [development guide](#development) below.
@@ -36,20 +40,6 @@ The Job Manager aspires to bring ease and efficiency to developing and debugging
 * Aborting workflows
 * Clean, intuitive UX based on material design principles
 
-### Future Features
-* Dynamic grouping, filtering, and drill-down
-* Re-launching workflows
-* Simplified troubleshooting of failed workflows
-* Improved UI design
-
-## Roadmap
-
-The current code is a work in progress towards an alpha release and as such has started with core features: connecting to both backends, visualizing workflow and task status and metadata, quick access to log files, and simple filtering.
-
-The near-term roadmap includes improvements to failure troubleshooting, creating a robust dashboard for grouping jobs and seeing status overviews, and improving handling of widely scattered workflows.
-
-We envision a product with user-customizable views of jobs running, insights into workflow compute cost, the ability to re-launch jobs, and the potential to make custom reports about the jobs that have been run.
-
 ## Architecture Overview
 
 The Job Manager [defines an API](api/jobs.yaml) via OpenAPI. An Angular2 UI is provided over the autogenerated Typescript bindings for this API. The UI is configurable at compilation time to support various deployment environments (see [environment.ts](ui/src/environments/environment.ts)), including auth, cloud projects, and label columns.
@@ -175,31 +165,31 @@ For `cromwell` server documentation, see [servers/cromwell](servers/cromwell/REA
 
 ### How to build
 
-From v0.2.0, Job Manager starts to release stock docker images on [DockerHub](https://hub.docker.com/u/databiosphere)
-
-- Setting the docker tag first in bash, e.g. `TAG="v0.1.0"`
+Starting with release v1.6.0, Job Manager docker images are on [GCR](https://console.cloud.google.com/gcr/images/broad-dsp-gcr-public).
 
-- To build the `job-manager-ui` image with `$TAG` from the root of this Github repository:
+- Configure Docker to authenticate with GCR
     ```
-    docker build -t job-manager-ui:$TAG . -f ui/Dockerfile
+    gcloud config set account username@broadinstitute.org
+    gcloud auth configure-docker us.gcr.io
     ```
-    
-- **Cromwell:** To build the `job-manager-api-cromwell` image with `$TAG` from the root of this Github repository:
+
+- Set the Docker tag first in bash, e.g. `TAG="v0.1.0"`
+
+- To publish the `job-manager-ui` image with `$TAG` from the root of this Github repository:
     ```
-    docker build -t job-manager-api-cromwell:$TAG . -f servers/cromwell/Dockerfile
+    docker build -t us.gcr.io/broad-dsp-gcr-public/job-manager-ui:$TAG . -f ui/Dockerfile
+    docker push us.gcr.io/broad-dsp-gcr-public/job-manager-ui:$TAG
     ```
     
-- **dsub:** To build the `job-manager-api-dsub` image with `$TAG` from the root of this Github repository:
+- To publish the `job-manager-api-cromwell` image with `$TAG` from the root of this Github repository:
     ```
-    docker build -t job-manager-api-dsub:$TAG . -f servers/dsub/Dockerfile
+    docker build -t us.gcr.io/broad-dsp-gcr-public/job-manager-api-cromwell:$TAG . -f servers/cromwell/Dockerfile
+    docker push us.gcr.io/broad-dsp-gcr-public/job-manager-api-cromwell:$TAG
     ```
 
-### Add a github release pointing to the dockerhub images
-
-From v0.2.0, each release in Github will also release 3 corresponding docker images on Docker Hub:
+### Add a Github release pointing to the GCR images
 
-- [job-manager-ui](https://hub.docker.com/r/databiosphere/job-manager-ui/)
-- [job-manager-api-cromwell](https://hub.docker.com/r/databiosphere/job-manager-api-cromwell/)
-- [job-manager-api-dsub](https://hub.docker.com/r/databiosphere/job-manager-api-dsub/)
+From v1.6.0, each release in Github will also release 2 corresponding Docker images on GCR:
 
-For a long-term plan, we will set up a docker build hook so the release process can be more automated.
+- [job-manager-ui](https://console.cloud.google.com/gcr/images/broad-dsp-gcr-public/US/job-manager-ui)
+- [job-manager-api-cromwell](https://console.cloud.google.com/gcr/images/broad-dsp-gcr-public/US/job-manager-api-cromwell)

ui/Dockerfile

@@ -6,7 +6,7 @@ ADD ./ /job-manager
 
 RUN /bin/bash -c scripts/rebuild_swagger.sh
 
-FROM node:lts
+FROM us.gcr.io/broad-dsp-gcr-public/base/nodejs:12-debian
 
 WORKDIR /ui
 
@@ -21,7 +21,7 @@ RUN npm install
 
 RUN /ui/node_modules/.bin/ng build --prod
 
-FROM nginx:stable
+FROM nginx:mainline-alpine
 
 COPY --from=1 /ui/dist /ui/dist
 ADD ./ui/nginx.prod.conf /etc/nginx/nginx.conf