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Utilities for calling variants and manipulating VCFs and BCFs

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debian
debian
 
 
test
test
 
 
.gitignore
.gitignore
 
 
.travis.yml
.travis.yml
 
 
Makefile
Makefile
 
 
README.md
README.md
 
 
bcfidx.c
bcfidx.c
 
 
bcftools.1
bcftools.1
 
 
bcftools.h
bcftools.h
 
 
call.h
call.h
 
 
ccall.c
ccall.c
 
 
em.c
em.c
 
 
filter.c
filter.c
 
 
filter.h
filter.h
 
 
kmin.c
kmin.c
 
 
kmin.h
kmin.h
 
 
main.c
main.c
 
 
mcall.c
mcall.c
 
 
plot-vcfstats
plot-vcfstats
 
 
prob1.c
prob1.c
 
 
prob1.h
prob1.h
 
 
rbuf.h
rbuf.h
 
 
tabix.c
tabix.c
 
 
vcfannotate.c
vcfannotate.c
 
 
vcfcall.c
vcfcall.c
 
 
vcffilter.c
vcffilter.c
 
 
vcfgtcheck.c
vcfgtcheck.c
 
 
vcfisec.c
vcfisec.c
 
 
vcfmerge.c
vcfmerge.c
 
 
vcfnorm.c
vcfnorm.c
 
 
vcfquery.c
vcfquery.c
 
 
vcfroh.c
vcfroh.c
 
 
vcfsom.c
vcfsom.c
 
 
vcfstats.c
vcfstats.c
 
 
vcfsubset.c
vcfsubset.c
 
 
vcfview.c
vcfview.c
 
 
vcmp.c
vcmp.c
 
 
vcmp.h
vcmp.h
 
 

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This is the official development repository for BCFtools. It contains all the vcf* commands which previously lived in the htslib repository (such as vcfcheck, vcfmerge, vcfisec, etc.) and the samtools BCF calling from bcftools subdirectory of samtools.

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Utilities for calling variants and manipulating VCFs and BCFs

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