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Merge pull request #17 from ufs-community/develop
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Update NEMS,FV3,CICE (#28)
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@DeniseWorthen
DeniseWorthen committed Feb 27, 2020
2 parents fb154e5 + 4247584 commit c5628b3
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Showing 7 changed files with 2,301 additions and 195 deletions.
2 changes: 1 addition & 1 deletion CICE_SRC
Submodule CICE_SRC updated 2 files
+0 −2 lanl_cice/bld/Macros.Linux.NEMS.cheyenne
+12 −12 lanl_cice_cap/cice_cap.F90
2 changes: 1 addition & 1 deletion FV3
Submodule FV3 updated 13 files
+1 −1 atmos_cubed_sphere
+5 −5 atmos_model.F90
+105 −3 cpl/module_cap_cpl.F90
+5 −5 cpl/module_cplfields.F90
+44 −8 fv3_cap.F90
+4 −1 gfsphysics/GFS_layer/GFS_typedefs.F90
+5 −0 io/CMakeLists.txt
+4 −1 io/makefile
+2 −1 io/module_fv3_io_def.F90
+59 −47 io/module_write_netcdf.F90
+617 −0 io/module_write_netcdf_parallel.F90
+79 −17 io/module_wrt_grid_comp.F90
+168 −158 io/post_gfs.F90
2 changes: 1 addition & 1 deletion NEMS
Submodule NEMS updated 7 files
+166 −0 LICENSE.md
+4 −0 src/GNUmakefile
+7 −0 src/incmake/component_CICE.mk
+47 −0 src/incmake/component_CMEPS.mk
+7 −0 src/incmake/component_MOM6.mk
+451 −8 src/module_EARTH_GRID_COMP.F90
+199 −144 src/module_MEDIATOR.F90
4 changes: 2 additions & 2 deletions compsets/hera.input
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Original file line number Diff line number Diff line change
Expand Up @@ -26,8 +26,8 @@ platform hera.intel {
# INPUTS is the input directory, which should contain fix and parm
# files, plus any restarts or other inputs.

BASELINE="/scratch1/NCEPDEV/nems/emc.nemspara/RT/FV3-MOM6-CICE5/master-20200128"
BASELINE_TEMPLATE="/scratch1/NCEPDEV/nems/emc.nemspara/RT/FV3-MOM6-CICE5/master-20200128"
BASELINE="/scratch1/NCEPDEV/nems/emc.nemspara/RT/FV3-MOM6-CICE5/master-20200228"
BASELINE_TEMPLATE="/scratch1/NCEPDEV/nems/emc.nemspara/RT/FV3-MOM6-CICE5/master-20200228"
INPUTS="@[BASELINE]"

default_resources={
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2,370 changes: 2,236 additions & 134 deletions log/report-hera.intel-log/build_fv3_mom6_cice.exe.log
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114 changes: 58 additions & 56 deletions log/report-hera.intel-log/rtreport.txt
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Original file line number Diff line number Diff line change
@@ -1,34 +1,36 @@
Run rocotostat...
Generate report...
WORKFLOW STARTED AT Wed Feb 19 15:06:49 2020 (+1582124809)
WORKFLOW STARTED AT Thu Feb 27 15:42:54 2020 (+1582818174)
Repository information:


REPO TOP:
develop a05d12a [origin/develop] Merge remote-tracking branch 'upstream/develop' into develop
Fetch URL: https://github.com/binli2337/ufs-s2s-model
M compsets/datesuite_warm.input
develop fb154e5 [origin/develop] Merge pull request #15 from ufs-community/develop
Fetch URL: https://github.com/DeniseWorthen/ufs-s2s-model.git
M .gitmodules
M NEMS
M log/report-hera.intel-log/build_fv3_mom6_cice.exe.log
M log/report-hera.intel-log/rtreport.txt
M parm/REGTEST-FINGERPRINT.md

Entering 'CICE_SRC'
(HEAD detached at aafac32) aafac32 Code changes to support automatic debug compilation (#10)
(HEAD detached at 27e5e3f) 27e5e3f Change field names (#13)
Fetch URL: https://github.com/NOAA-EMC/CICE5.git

Entering 'FMS'
(HEAD detached at 46014b4) 46014b4 Merge pull request #8 from DusanJovic-NOAA/GFS-FMS
Fetch URL: https://github.com/NOAA-EMC/FMS

Entering 'FV3'
(HEAD detached at 7ffe647) 7ffe647 GFSv16 netcdf post ficein cpl (#48)
(HEAD detached at 8683a69) 8683a69 Iaudrymass coupledfield ww3 (#61)
Fetch URL: https://github.com/NOAA-EMC/fv3atm

Entering 'MOM6'
(HEAD detached at 1fd3493) 1fd3493 Merge pull request #9 from jiandewang/update-MOM6-20200108
Fetch URL: https://github.com/NOAA-EMC/MOM6-interface

Entering 'NEMS'
(HEAD detached at 044400a) 044400a remove ice-ocean merge in prep_atm (#24)
develop c19bb03 [origin/develop] Feature/changefldnames (#29)
Fetch URL: https://github.com/NOAA-EMC/NEMS.git

Entering 'stochastic_physics'
Expand All @@ -39,8 +41,8 @@ Fetch URL: https://github.com/noaa-psd/stochastic_physics
BUILD fv3_mom6_cice.exe: SUCCEEDED

TEST #1: PASS
Test cpld_fv3_384_mom6_cice_2d_atm_flux starting at Wed Feb 19 15:08:39 UTC 2020 (Fully coupled FV3-MOM6-CICE system - 2d_warm)
Wed Feb 19 15:08:39 UTC 2020
Test cpld_fv3_384_mom6_cice_2d_atm_flux starting at Thu Feb 27 16:08:20 UTC 2020 (Fully coupled FV3-MOM6-CICE system - 2d_warm)
Thu Feb 27 16:08:20 UTC 2020
phyf048.tile1.nc: bit-for-bit identical
phyf048.tile2.nc: bit-for-bit identical
phyf048.tile3.nc: bit-for-bit identical
Expand Down Expand Up @@ -113,14 +115,14 @@ TEST #1: PASS
mediator_FBHyd_h_restart.nc: bit-for-bit identical
mediator_FBAtmOcn_o_restart.nc: bit-for-bit identical
Executable did not change during test suite:
File: /scratch1/NCEPDEV/stmp2/Bin.Li/scrub/rtgen.7798/exec/fv3_mom6_cice.exe
Expected md5sum: 4151654629a97a719af343c4dc9f6672
Actual md5sum: 4151654629a97a719af343c4dc9f6672
TEST PASSED AT Wed Feb 19 15:53:23 UTC 2020
File: /scratch1/NCEPDEV/stmp2/Denise.Worthen/RTs/rtgen.257098/exec/fv3_mom6_cice.exe
Expected md5sum: 4614535d8b59ef0108ae93e24cd73add
Actual md5sum: 4614535d8b59ef0108ae93e24cd73add
TEST PASSED AT Thu Feb 27 16:53:11 UTC 2020

TEST #2: PASS
Test cpld_fv3_mom6_cice_2d_decomp starting at Wed Feb 19 15:08:40 UTC 2020 (Fully coupled FV3-MOM6-CICE system - decomp)
Wed Feb 19 15:08:40 UTC 2020
Test cpld_fv3_mom6_cice_2d_decomp starting at Thu Feb 27 16:08:21 UTC 2020 (Fully coupled FV3-MOM6-CICE system - decomp)
Thu Feb 27 16:08:21 UTC 2020
phyf048.tile1.nc: bit-for-bit identical
phyf048.tile2.nc: bit-for-bit identical
phyf048.tile3.nc: bit-for-bit identical
Expand Down Expand Up @@ -193,14 +195,14 @@ TEST #2: PASS
mediator_FBHyd_h_restart.nc: bit-for-bit identical
mediator_FBAtmOcn_o_restart.nc: bit-for-bit identical
Executable did not change during test suite:
File: /scratch1/NCEPDEV/stmp2/Bin.Li/scrub/rtgen.7798/exec/fv3_mom6_cice.exe
Expected md5sum: 4151654629a97a719af343c4dc9f6672
Actual md5sum: 4151654629a97a719af343c4dc9f6672
TEST PASSED AT Wed Feb 19 15:35:06 UTC 2020
File: /scratch1/NCEPDEV/stmp2/Denise.Worthen/RTs/rtgen.257098/exec/fv3_mom6_cice.exe
Expected md5sum: 4614535d8b59ef0108ae93e24cd73add
Actual md5sum: 4614535d8b59ef0108ae93e24cd73add
TEST PASSED AT Thu Feb 27 16:34:47 UTC 2020

TEST #3: PASS
Test cpld_fv3_mom6_cice_2d_atm_flux starting at Wed Feb 19 15:08:59 UTC 2020 (Fully coupled FV3-MOM6-CICE system - 2d_warm)
Wed Feb 19 15:08:59 UTC 2020
Test cpld_fv3_mom6_cice_2d_atm_flux starting at Thu Feb 27 16:08:24 UTC 2020 (Fully coupled FV3-MOM6-CICE system - 2d_warm)
Thu Feb 27 16:08:24 UTC 2020
phyf048.tile1.nc: bit-for-bit identical
phyf048.tile2.nc: bit-for-bit identical
phyf048.tile3.nc: bit-for-bit identical
Expand Down Expand Up @@ -273,14 +275,14 @@ TEST #3: PASS
mediator_FBHyd_h_restart.nc: bit-for-bit identical
mediator_FBAtmOcn_o_restart.nc: bit-for-bit identical
Executable did not change during test suite:
File: /scratch1/NCEPDEV/stmp2/Bin.Li/scrub/rtgen.7798/exec/fv3_mom6_cice.exe
Expected md5sum: 4151654629a97a719af343c4dc9f6672
Actual md5sum: 4151654629a97a719af343c4dc9f6672
TEST PASSED AT Wed Feb 19 15:35:23 UTC 2020
File: /scratch1/NCEPDEV/stmp2/Denise.Worthen/RTs/rtgen.257098/exec/fv3_mom6_cice.exe
Expected md5sum: 4614535d8b59ef0108ae93e24cd73add
Actual md5sum: 4614535d8b59ef0108ae93e24cd73add
TEST PASSED AT Thu Feb 27 16:35:19 UTC 2020

TEST #4: PASS
Test cpld_fv3_mom6_cice_2d_2threads starting at Wed Feb 19 15:11:42 UTC 2020 (Fully coupled FV3-MOM6-CICE system - 2 threads)
Wed Feb 19 15:11:42 UTC 2020
Test cpld_fv3_mom6_cice_2d_2threads starting at Thu Feb 27 16:08:42 UTC 2020 (Fully coupled FV3-MOM6-CICE system - 2 threads)
Thu Feb 27 16:08:42 UTC 2020
phyf048.tile1.nc: bit-for-bit identical
phyf048.tile2.nc: bit-for-bit identical
phyf048.tile3.nc: bit-for-bit identical
Expand Down Expand Up @@ -353,14 +355,14 @@ TEST #4: PASS
mediator_FBHyd_h_restart.nc: bit-for-bit identical
mediator_FBAtmOcn_o_restart.nc: bit-for-bit identical
Executable did not change during test suite:
File: /scratch1/NCEPDEV/stmp2/Bin.Li/scrub/rtgen.7798/exec/fv3_mom6_cice.exe
Expected md5sum: 4151654629a97a719af343c4dc9f6672
Actual md5sum: 4151654629a97a719af343c4dc9f6672
TEST PASSED AT Wed Feb 19 15:38:45 UTC 2020
File: /scratch1/NCEPDEV/stmp2/Denise.Worthen/RTs/rtgen.257098/exec/fv3_mom6_cice.exe
Expected md5sum: 4614535d8b59ef0108ae93e24cd73add
Actual md5sum: 4614535d8b59ef0108ae93e24cd73add
TEST PASSED AT Thu Feb 27 16:35:52 UTC 2020

TEST #5: PASS
Test cpld_fv3_mom6_cice_1d_satmedmf starting at Wed Feb 19 15:10:04 UTC 2020 (Fully coupled FV3-MOM6-CICE system - satmedmf)
Wed Feb 19 15:10:04 UTC 2020
Test cpld_fv3_mom6_cice_1d_satmedmf starting at Thu Feb 27 16:08:21 UTC 2020 (Fully coupled FV3-MOM6-CICE system - satmedmf)
Thu Feb 27 16:08:21 UTC 2020
phyf024.tile1.nc: bit-for-bit identical
phyf024.tile2.nc: bit-for-bit identical
phyf024.tile3.nc: bit-for-bit identical
Expand Down Expand Up @@ -433,14 +435,14 @@ TEST #5: PASS
mediator_FBHyd_h_restart.nc: bit-for-bit identical
mediator_FBAtmOcn_o_restart.nc: bit-for-bit identical
Executable did not change during test suite:
File: /scratch1/NCEPDEV/stmp2/Bin.Li/scrub/rtgen.7798/exec/fv3_mom6_cice.exe
Expected md5sum: 4151654629a97a719af343c4dc9f6672
Actual md5sum: 4151654629a97a719af343c4dc9f6672
TEST PASSED AT Wed Feb 19 15:25:19 UTC 2020
File: /scratch1/NCEPDEV/stmp2/Denise.Worthen/RTs/rtgen.257098/exec/fv3_mom6_cice.exe
Expected md5sum: 4614535d8b59ef0108ae93e24cd73add
Actual md5sum: 4614535d8b59ef0108ae93e24cd73add
TEST PASSED AT Thu Feb 27 16:23:36 UTC 2020

TEST #6: PASS
Test cpld_fv3_384_mom6_cice_cold_atm_flux starting at Wed Feb 19 15:10:04 UTC 2020 (Fully coupled FV3-MOM6-CICE system - cold 384)
Wed Feb 19 15:10:04 UTC 2020
Test cpld_fv3_384_mom6_cice_cold_atm_flux starting at Thu Feb 27 16:08:21 UTC 2020 (Fully coupled FV3-MOM6-CICE system - cold 384)
Thu Feb 27 16:08:21 UTC 2020
phyf001.tile1.nc: bit-for-bit identical
phyf001.tile2.nc: bit-for-bit identical
phyf001.tile3.nc: bit-for-bit identical
Expand Down Expand Up @@ -496,14 +498,14 @@ TEST #6: PASS
mediator_FBOcn_o_restart.nc: bit-for-bit identical
mediator_scalars_restart.txt: bit-for-bit identical
Executable did not change during test suite:
File: /scratch1/NCEPDEV/stmp2/Bin.Li/scrub/rtgen.7798/exec/fv3_mom6_cice.exe
Expected md5sum: 4151654629a97a719af343c4dc9f6672
Actual md5sum: 4151654629a97a719af343c4dc9f6672
TEST PASSED AT Wed Feb 19 15:15:18 UTC 2020
File: /scratch1/NCEPDEV/stmp2/Denise.Worthen/RTs/rtgen.257098/exec/fv3_mom6_cice.exe
Expected md5sum: 4614535d8b59ef0108ae93e24cd73add
Actual md5sum: 4614535d8b59ef0108ae93e24cd73add
TEST PASSED AT Thu Feb 27 16:13:20 UTC 2020

TEST #7: PASS
Test cpld_fv3_mom6_cice_cold_satmedmf starting at Wed Feb 19 15:11:33 UTC 2020 (Fully coupled FV3-MOM6-CICE system - cold_satmedmf)
Wed Feb 19 15:11:33 UTC 2020
Test cpld_fv3_mom6_cice_cold_satmedmf starting at Thu Feb 27 16:08:21 UTC 2020 (Fully coupled FV3-MOM6-CICE system - cold_satmedmf)
Thu Feb 27 16:08:21 UTC 2020
phyf001.tile1.nc: bit-for-bit identical
phyf001.tile2.nc: bit-for-bit identical
phyf001.tile3.nc: bit-for-bit identical
Expand Down Expand Up @@ -559,14 +561,14 @@ TEST #7: PASS
mediator_FBOcn_o_restart.nc: bit-for-bit identical
mediator_scalars_restart.txt: bit-for-bit identical
Executable did not change during test suite:
File: /scratch1/NCEPDEV/stmp2/Bin.Li/scrub/rtgen.7798/exec/fv3_mom6_cice.exe
Expected md5sum: 4151654629a97a719af343c4dc9f6672
Actual md5sum: 4151654629a97a719af343c4dc9f6672
TEST PASSED AT Wed Feb 19 15:14:12 UTC 2020
File: /scratch1/NCEPDEV/stmp2/Denise.Worthen/RTs/rtgen.257098/exec/fv3_mom6_cice.exe
Expected md5sum: 4614535d8b59ef0108ae93e24cd73add
Actual md5sum: 4614535d8b59ef0108ae93e24cd73add
TEST PASSED AT Thu Feb 27 16:10:52 UTC 2020

TEST #8: PASS
Test cpld_fv3_mom6_cice_cold_atm_flux starting at Wed Feb 19 15:11:33 UTC 2020 (Fully coupled FV3-MOM6-CICE system - cold start)
Wed Feb 19 15:11:33 UTC 2020
Test cpld_fv3_mom6_cice_cold_atm_flux starting at Thu Feb 27 16:08:30 UTC 2020 (Fully coupled FV3-MOM6-CICE system - cold start)
Thu Feb 27 16:08:30 UTC 2020
phyf001.tile1.nc: bit-for-bit identical
phyf001.tile2.nc: bit-for-bit identical
phyf001.tile3.nc: bit-for-bit identical
Expand Down Expand Up @@ -622,11 +624,11 @@ TEST #8: PASS
mediator_FBOcn_o_restart.nc: bit-for-bit identical
mediator_scalars_restart.txt: bit-for-bit identical
Executable did not change during test suite:
File: /scratch1/NCEPDEV/stmp2/Bin.Li/scrub/rtgen.7798/exec/fv3_mom6_cice.exe
Expected md5sum: 4151654629a97a719af343c4dc9f6672
Actual md5sum: 4151654629a97a719af343c4dc9f6672
TEST PASSED AT Wed Feb 19 15:14:12 UTC 2020
WORKFLOW REPORT AT Wed Feb 19 15:54:21 2020 (+1582127661)
File: /scratch1/NCEPDEV/stmp2/Denise.Worthen/RTs/rtgen.257098/exec/fv3_mom6_cice.exe
Expected md5sum: 4614535d8b59ef0108ae93e24cd73add
Actual md5sum: 4614535d8b59ef0108ae93e24cd73add
TEST PASSED AT Thu Feb 27 16:10:56 UTC 2020
WORKFLOW REPORT AT Thu Feb 27 16:53:33 2020 (+1582822413)
Tests: 0 failed, 8 passed out of 8
Builds: 0 failed, 1 passed out of 1
REGRESSION TEST WAS SUCCESSFUL
2 changes: 2 additions & 0 deletions parm/REGTEST-FINGERPRINT.md
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Original file line number Diff line number Diff line change
Expand Up @@ -86,3 +86,5 @@ Change log:
Input templates were removed and fix file directories were cleaned up
* Jan. 28, 2020 FV3 ensures imported ice_fraction is in range (0-1), merges between
ice and ocean in prep_atm phase of mediator are removed
* Feb. 27, 2020 Field name changes for CICE SW, removal of custom merges in prep_atm, removal
of mediator fluxes for icy water in prep_ocn

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