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Vincent Gardeux committed Jul 9, 2019
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# ASAP : Automated Single-cell Analysis Pipeline

Here are the source codes used on the server to run the different tools available on <a href="https://asap.epfl.ch">ASAP</a>.
Here are the source codes used on the server to run the different tools available on <a href="https://asap-beta.epfl.ch">ASAP</a>.
Currently, this code is running on the BETA version of ASAP, but the original website is still accessible <a href="https://asap.epfl.ch">here</a>.

Mostly, this is composed of:
- R scripts (for most of the tools)
- Python script (for ZIFA visualization method)
- R & Python scripts (for most of the tools)
- Java code (for handling the Loom files, generating the JSON, handling the fast-no-RAM computations)
- [Ruby-On-Rails Server code](https://github.com/fabdavid/asap_web)
- [Docker file](https://github.com/fabdavid/asap2_web)

Please visit <a href="https://asap.epfl.ch">ASAP</a> for more information and <a href="https://asap.epfl.ch/home/about">references of the different tools</a>
Please visit <a href="https://asap-beta.epfl.ch">ASAP</a> for more information.

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