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fix subj to template registration
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@amakropoulos
amakropoulos committed Oct 26, 2020
1 parent ba09e72 commit 5f7942d
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions scripts/misc/pipeline.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -139,8 +139,8 @@ for m in T1 T2;do
done


if [ ! -f dofs/template-$age-$subj-n.dof.gz ];then
run mirtk register $T2masked $TEMPLATE_T2/template-$age.nii.gz -dofout dofs/template-$age-$subj-n.dof.gz -parin $REGISTRATION_TEMPLATE_CONFIG -threads $threads -v 0
if [ ! -f dofs/$subj-template-$age-n.dof.gz ];then
run mirtk register $T2masked $TEMPLATE_T2/template-$age.nii.gz -dofout dofs/$subj-template-$age-n.dof.gz -parin $REGISTRATION_TEMPLATE_CONFIG -threads $threads -v 0
fi

if [ ! -f dofs/$subj-template-$age-r.dof.gz ];then
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1 comment on commit 5f7942d

@schuhschuh
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Hey Antonis, looks like the fix for this was simply to remove those three lines instead because the transformation is computed further below.

See also: BioMedIA#14

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