This repository has been archived by the owner on Sep 2, 2024. It is now read-only.
(#842) Fix ispyb activation so that messages can be logged from pin tip detection #5568
Workflow file for this run
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| name: Code CI | |
| on: | |
| push: | |
| pull_request: | |
| schedule: | |
| # Run every Monday at 8am to check latest versions of dependencies | |
| - cron: "0 8 * * WED" | |
| jobs: | |
| lint: | |
| # pull requests are a duplicate of a branch push if within the same repo. | |
| if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name != github.repository | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Setup Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.11" | |
| architecture: x64 | |
| - name: Checkout Hyperion | |
| uses: actions/checkout@v4 | |
| - name: Install ruff | |
| run: pip install ruff | |
| - name: Run ruff | |
| run: ruff check . | |
| tests: | |
| if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name != github.repository | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Setup python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.11" | |
| - name: Install with latest dependencies | |
| run: pip install -e .[dev] | |
| - name: Run Pyright on changes | |
| run: diff-quality --violations=pyright --fail-under=100 | |
| - name: Run tests | |
| run: pytest --logging -s --random-order -m "not (dlstbx or s03)" | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| name: ${{ matrix.python }}/${{ matrix.os }} | |
| files: cov.xml | |
| - name: Prepare test data for reference nexus | |
| run: hyperion-populate-test-and-meta-files | |
| - name: Run imginfo on reference nexus | |
| uses: ./.github/actions/verify-nexus | |
| id: verify_reference_nexus | |
| with: | |
| filename: "tests/test_data/nexus_files/rotation/ins_8_5.nxs" | |
| # ugly hack because we get double free error on exit | |
| - name: Generate test nexus files | |
| run: hyperion-generate-test-nexus | |
| - name: Report test nexus files | |
| run: echo "filename=$(cat OUTPUT_FILENAME)" >> $GITHUB_OUTPUT | |
| id: generated_nexus | |
| - name: Run imginfo on generated nexus | |
| uses: ./.github/actions/verify-nexus | |
| id: verify_generated_nexus | |
| with: | |
| filename: ${{ steps.generated_nexus.outputs.filename }} |