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@Dowell-Lab

Dowell Lab

Popular repositories Loading

  1. TFEA TFEA Public

    Transcription Factor Enrichment Analysis

    Jupyter Notebook 31 7

  2. DAStk DAStk Public

    Differential ATAC-seq toolkit

    Python 27 7

  3. srworkshop srworkshop Public

    Scripts and files for the annual Short Read Analysis Workshop

    Jupyter Notebook 9 3

  4. Nascent-Flow Nascent-Flow Public

    Nascent Transcription Processing Pipeline

    Nextflow 8 5

  5. RNAseq-Flow RNAseq-Flow Public

    Nextflow pipeline for processing RNA-seq data

    Nextflow 7 5

  6. ChIP-Flow ChIP-Flow Public

    Nextflow pipeline for ChIP-seq analysis.

    Nextflow 4

Repositories

Showing 10 of 36 repositories
  • TF_profiler Public
    Dowell-Lab/TF_profiler’s past year of commit activity
    Python 0 0 0 0 Updated Jul 24, 2024
  • Bidir_Counting_Analysis Public

    This repo includes the generalizable pipeline for identification, counting, and length assessments of Bidirectionals from nascent RNA seq data

    Dowell-Lab/Bidir_Counting_Analysis’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jul 24, 2024
  • srworkshop Public

    Scripts and files for the annual Short Read Analysis Workshop

    Dowell-Lab/srworkshop’s past year of commit activity
    Jupyter Notebook 9 GPL-3.0 3 0 0 Updated Jul 19, 2024
  • bidir_gene_pairs Public

    Bidirectional transcript and gene pairs derived from nascent RNA data

    Dowell-Lab/bidir_gene_pairs’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated May 29, 2024
  • mumerge Public

    muMerge tool for combining replicate bed-regions

    Dowell-Lab/mumerge’s past year of commit activity
    Python 4 GPL-3.0 1 0 0 Updated May 24, 2024
  • Bidirectional-Flow Public

    Nextflow pipeline for detecting bidirectional transcripts from nascent RNA sequencing data.

    Dowell-Lab/Bidirectional-Flow’s past year of commit activity
    Nextflow 0 GPL-3.0 1 0 0 Updated Apr 23, 2024
  • CDK7_inhibition Public

    Scripts and code used to analyze data in CDK7 inhibition project

    Dowell-Lab/CDK7_inhibition’s past year of commit activity
    0 0 0 0 Updated Apr 11, 2024
  • TFEA Public

    Transcription Factor Enrichment Analysis

    Dowell-Lab/TFEA’s past year of commit activity
    Jupyter Notebook 31 GPL-3.0 7 14 4 Updated Apr 3, 2024
  • DBNascent-build Public

    Python scripts and utilities for building DBNascent in MySQL

    Dowell-Lab/DBNascent-build’s past year of commit activity
    Python 0 0 0 0 Updated Feb 26, 2024
  • Nascent-Flow Public

    Nascent Transcription Processing Pipeline

    Dowell-Lab/Nascent-Flow’s past year of commit activity
    Nextflow 8 MIT 5 1 0 Updated Jan 24, 2024
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