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idworkin committed Sep 2, 2015
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Expand Up @@ -14,9 +14,10 @@ BG: The basic skill set for practical bioinformatics research (with NGS data)

BE: Identifying and utilizing polymorphism data from Illumina resequencing (and reduced representation sequencing).

Introduction to the Macaque data
Data types for identifying polymorphism (reduced representation approaches in particular).
SNP calling/genotyping: GATK (and base recalibration, deduplication, unified genotyper VS. haplotype caller), vcftools, vcf file formats, bed file format
- Introduction to the Macaque data
- Data types for identifying polymorphism (reduced representation approaches in particular).
- SNP calling/genotyping: GATK (and base recalibration, deduplication, unified genotyper VS. haplotype caller)
- vcftools, vcfformats, bed file format

ID: Introduction to using RNAseq for the analysis of differentially expressed genes

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