{2023.06}[foss/2021a] R v4.1.0 #328

boegel · 2023-09-07T11:33:51Z

edit (2023-09-19) missing installations for R-4.1.0-foss-2021a.eb:

23 out of 106 required modules missing:

* pixman/0.40.0-GCCcore-10.3.0 (pixman-0.40.0-GCCcore-10.3.0.eb)
* nettle/3.7.2-GCCcore-10.3.0 (nettle-3.7.2-GCCcore-10.3.0.eb)
* cairo/1.16.0-GCCcore-10.3.0 (cairo-1.16.0-GCCcore-10.3.0.eb)
* Xvfb/1.20.11-GCCcore-10.3.0 (Xvfb-1.20.11-GCCcore-10.3.0.eb)
* Tk/8.6.11-GCCcore-10.3.0 (Tk-8.6.11-GCCcore-10.3.0.eb)
* NLopt/2.7.0-GCCcore-10.3.0 (NLopt-2.7.0-GCCcore-10.3.0.eb)
* libogg/1.3.4-GCCcore-10.3.0 (libogg-1.3.4-GCCcore-10.3.0.eb)
* FLAC/1.3.3-GCCcore-10.3.0 (FLAC-1.3.3-GCCcore-10.3.0.eb)
* libvorbis/1.3.7-GCCcore-10.3.0 (libvorbis-1.3.7-GCCcore-10.3.0.eb)
* libsndfile/1.0.31-GCCcore-10.3.0 (libsndfile-1.0.31-GCCcore-10.3.0.eb)
* UDUNITS/2.2.28-GCCcore-10.3.0 (UDUNITS-2.2.28-GCCcore-10.3.0.eb)
* GSL/2.7-GCC-10.3.0 (GSL-2.7-GCC-10.3.0.eb)
* GLPK/5.0-GCCcore-10.3.0 (GLPK-5.0-GCCcore-10.3.0.eb)
* Ghostscript/9.54.0-GCCcore-10.3.0 (Ghostscript-9.54.0-GCCcore-10.3.0.eb)
* nodejs/14.17.0-GCCcore-10.3.0 (nodejs-14.17.0-GCCcore-10.3.0.eb)
* LittleCMS/2.12-GCCcore-10.3.0 (LittleCMS-2.12-GCCcore-10.3.0.eb)
* GObject-Introspection/1.68.0-GCCcore-10.3.0 (GObject-Introspection-1.68.0-GCCcore-10.3.0.eb)
* libgit2/1.1.0-GCCcore-10.3.0 (libgit2-1.1.0-GCCcore-10.3.0.eb)
* HarfBuzz/2.8.1-GCCcore-10.3.0 (HarfBuzz-2.8.1-GCCcore-10.3.0.eb)
* FriBidi/1.0.10-GCCcore-10.3.0 (FriBidi-1.0.10-GCCcore-10.3.0.eb)
* Pango/1.48.5-GCCcore-10.3.0 (Pango-1.48.5-GCCcore-10.3.0.eb)
* ImageMagick/7.0.11-14-GCCcore-10.3.0 (ImageMagick-7.0.11-14-GCCcore-10.3.0.eb)
* R/4.1.0-foss-2021a (R-4.1.0-foss-2021a.eb)

eessi-bot-aws · 2023-09-07T11:33:54Z

Instance eessi-bot-citc-aws is configured to build:

arch x86_64/generic for repo eessi-2021.12
arch x86_64/generic for repo eessi-2023.06-compat
arch x86_64/generic for repo eessi-2023.06-software
arch x86_64/intel/haswell for repo eessi-2021.12
arch x86_64/intel/haswell for repo eessi-2023.06-compat
arch x86_64/intel/haswell for repo eessi-2023.06-software
arch x86_64/intel/skylake_avx512 for repo eessi-2021.12
arch x86_64/intel/skylake_avx512 for repo eessi-2023.06-compat
arch x86_64/intel/skylake_avx512 for repo eessi-2023.06-software
arch x86_64/amd/zen2 for repo eessi-2021.12
arch x86_64/amd/zen2 for repo eessi-2023.06-compat
arch x86_64/amd/zen2 for repo eessi-2023.06-software
arch x86_64/amd/zen3 for repo eessi-2021.12
arch x86_64/amd/zen3 for repo eessi-2023.06-compat
arch x86_64/amd/zen3 for repo eessi-2023.06-software
arch aarch64/generic for repo eessi-2021.12
arch aarch64/generic for repo eessi-2023.06-compat
arch aarch64/generic for repo eessi-2023.06-software
arch aarch64/neoverse_n1 for repo eessi-2021.12
arch aarch64/neoverse_n1 for repo eessi-2023.06-compat
arch aarch64/neoverse_n1 for repo eessi-2023.06-software
arch aarch64/neoverse_v1 for repo eessi-2021.12
arch aarch64/neoverse_v1 for repo eessi-2023.06-compat
arch aarch64/neoverse_v1 for repo eessi-2023.06-software

boegel · 2023-09-07T11:35:12Z

bot: build repo:eessi-2023.06-software arch:x86_64/generic
bot: build repo:eessi-2023.06-software arch:aarch64/neoverse_v1

eessi-bot-aws · 2023-09-07T11:35:15Z

Updates by the bot instance eessi-bot-citc-aws (click for details)

received bot command build repo:eessi-2023.06-software arch:x86_64/generic from boegel
- expanded format: build repository:eessi-2023.06-software architecture:x86_64/generic
received bot command build repo:eessi-2023.06-software arch:aarch64/neoverse_v1 from boegel
- expanded format: build repository:eessi-2023.06-software architecture:aarch64/neoverse_v1
handling command build repository:eessi-2023.06-software architecture:x86_64/generic resulted in:
- submitted job 7201, for details & status see {2023.06}[foss/2021a] R v4.1.0 #328 (comment)
handling command build repository:eessi-2023.06-software architecture:aarch64/neoverse_v1 resulted in:
- submitted job 7202, for details & status see {2023.06}[foss/2021a] R v4.1.0 #328 (comment)

eessi-bot-aws · 2023-09-07T11:35:21Z

New job on instance eessi-bot-citc-aws for architecture x86_64-generic for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.09/pr_328/7201

date	job status	comment
Sep 07 11:35:20 UTC 2023	submitted	job id `7201` awaits release by job manager
Sep 07 11:36:21 UTC 2023	released	job awaits launch by Slurm scheduler
Sep 07 11:43:49 UTC 2023	running	job `7201` is running
Sep 07 11:59:25 UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-7201.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1694087877.tar.gz` size: 12 MiB (13262889 bytes) entries: 285 modules under 2023.06/software/linux/x86_64/generic/modules/all `cairo/1.16.0-GCCcore-10.3.0.lua` `nettle/3.7.2-GCCcore-10.3.0.lua` `pixman/0.40.0-GCCcore-10.3.0.lua` software under 2023.06/software/linux/x86_64/generic/software `cairo/1.16.0-GCCcore-10.3.0` `nettle/3.7.2-GCCcore-10.3.0` `pixman/0.40.0-GCCcore-10.3.0` other under 2023.06/software/linux/x86_64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

eessi-bot-aws · 2023-09-07T11:35:28Z

New job on instance eessi-bot-citc-aws for architecture aarch64-neoverse_v1 for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.09/pr_328/7202

date	job status	comment
Sep 07 11:35:27 UTC 2023	submitted	job id `7202` awaits release by job manager
Sep 07 11:36:19 UTC 2023	released	job awaits launch by Slurm scheduler
Sep 07 11:40:11 UTC 2023	running	job `7202` is running
Sep 07 11:55:50 UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-7202.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_v1-1694087716.tar.gz` size: 12 MiB (13438101 bytes) entries: 285 modules under 2023.06/software/linux/aarch64/neoverse_v1/modules/all `cairo/1.16.0-GCCcore-10.3.0.lua` `nettle/3.7.2-GCCcore-10.3.0.lua` `pixman/0.40.0-GCCcore-10.3.0.lua` software under 2023.06/software/linux/aarch64/neoverse_v1/software `cairo/1.16.0-GCCcore-10.3.0` `nettle/3.7.2-GCCcore-10.3.0` `pixman/0.40.0-GCCcore-10.3.0` other under 2023.06/software/linux/aarch64/neoverse_v1 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

boegel · 2023-09-07T13:53:40Z

Job 7201

ERROR: Failed to get data for PR #18320 from easybuilders/easybuild-easyconfigs (HTTP Error 403: rate limit exceeded)

Job 7202 failed on completing the installation of Xvfb when copying xvfb-run (see also updated hook in #299)

== postprocessing...
  >> running command:
        [started at: 2023-09-07 11:53:23]
        [working dir: /tmp/bot/easybuild/build/Xvfb/1.20.11/GCCcore-10.3.0/xorg-server-1.20.11]
        [output logged in /tmp/eb-qlsceeif/eb-yh_y18f6/eb-kal374ga/eb-33hdsg_u/eb-tse0gvls/eb-kos01ey0/eb-5vjxiz40/eb-yx01rwsi/eb-ht1t6cwg/eb-__z_bzyj/eb-n79h8hug/eb-fml_f7u1/eb-9esw_ibx/easybuild-run_cmd-mv1qmgzl.log]
        cp -a xvfb-run /cvmfs/pilot.eessi-hpc.org/versions/2023.06/software/linux/aarch64/neoverse_v1/software/Xvfb/1.20.11-GCCcore-10.3.0/bin/ && chmod u+x  /cvmfs/pilot.eessi-hpc.org/versions/2023.06/software/linux/aarch64/neoverse_v1/software/Xvfb/1.20.11-GCCcore-10.3.0/bin/xvfb-run
  >> command completed: exit 1, ran in < 1s
== ... (took < 1 sec)
== FAILED: Installation ended unsuccessfully (build directory: /tmp/bot/easybuild/build/Xvfb/1.20.11/GCCcore-10.3.0): build failed (first 300 chars): cmd "cp -a xvfb-run /cvmfs/pilot.eessi-hpc.org/versions/2023.06/software/linux/aarch64/neoverse_v1/software/Xvfb/1.20.11-GCCcore-10.3.0/bin/ && chmod u+x  /cvmfs/pilot.eessi-hpc.org/versions/2023.06/software/linux/aarch64/neoverse_v1/software/Xvfb/1.20.11-GCCcore-10.3.0/bin/xvfb-run" exited with exi (took 3 mins 59 secs)
== Results of the build can be found in the log file(s) /tmp/eb-qlsceeif/eb-yh_y18f6/eb-kal374ga/eb-33hdsg_u/eb-tse0gvls/eb-kos01ey0/eb-5vjxiz40/eb-yx01rwsi/eb-ht1t6cwg/eb-__z_bzyj/eb-n79h8hug/eb-fml_f7u1/eb-9esw_ibx/easybuild-Xvfb-1.20.11-20230907.114923.dItUG.log
0:08:43  3 out of 33 easyconfigs done: nettle/3.7.2-GCCcore-10.3.0 (OK), cairo/1ERROR: Build of /cvmfs/pilot.eessi-hpc.org/versions/2023.06/software/linux/aarch64/neoverse_v1/software/EasyBuild/4.7.2/easybuild/easyconfigs/x/Xvfb/Xvfb-1.20.11-GCCcore-10.3.0.eb failed (err: 'build failed (first 300 chars): cmd "cp -a xvfb-run /cvmfs/pilot.eessi-hpc.org/versions/2023.06/software/linux/aarch64/neoverse_v1/software/Xvfb/1.20.11-GCCcore-10.3.0/bin/ && chmod u+x  /cvmfs/pilot.eessi-hpc.org/versions/2023.06/software/linux/aarch64/neoverse_v1/software/Xvfb/1.20.11-GCCcore-10.3.0/bin/xvfb-run" exited with exi')

boegel · 2023-09-07T16:57:01Z

I'll chip away some of the required dependencies here while looking into the Xvfb issue, via:

{2023.06}[foss/2021a] GDAL v3.3.0 #329

boegel · 2023-09-19T13:37:00Z

bot: build repo:eessi-2023.06-software arch:x86_64/generic
bot: build repo:eessi-2023.06-software arch:x86_64/intel/haswell
bot: build repo:eessi-2023.06-software arch:x86_64/intel/skylake_avx512
bot: build repo:eessi-2023.06-software arch:x86_64/amd/zen2
bot: build repo:eessi-2023.06-software arch:x86_64/amd/zen3
bot: build repo:eessi-2023.06-software arch:aarch64/generic
bot: build repo:eessi-2023.06-software arch:aarch64/neoverse_n1
bot: build repo:eessi-2023.06-software arch:aarch64/neoverse_v1

eessi-bot-aws · 2023-09-19T13:37:03Z

Updates by the bot instance eessi-bot-citc-aws (click for details)

received bot command build repo:eessi-2023.06-software arch:x86_64/generic from boegel
- expanded format: build repository:eessi-2023.06-software architecture:x86_64/generic
received bot command build repo:eessi-2023.06-software arch:x86_64/intel/haswell from boegel
- expanded format: build repository:eessi-2023.06-software architecture:x86_64/intel/haswell
received bot command build repo:eessi-2023.06-software arch:x86_64/intel/skylake_avx512 from boegel
- expanded format: build repository:eessi-2023.06-software architecture:x86_64/intel/skylake_avx512
received bot command build repo:eessi-2023.06-software arch:x86_64/amd/zen2 from boegel
- expanded format: build repository:eessi-2023.06-software architecture:x86_64/amd/zen2
received bot command build repo:eessi-2023.06-software arch:x86_64/amd/zen3 from boegel
- expanded format: build repository:eessi-2023.06-software architecture:x86_64/amd/zen3
received bot command build repo:eessi-2023.06-software arch:aarch64/generic from boegel
- expanded format: build repository:eessi-2023.06-software architecture:aarch64/generic
received bot command build repo:eessi-2023.06-software arch:aarch64/neoverse_n1 from boegel
- expanded format: build repository:eessi-2023.06-software architecture:aarch64/neoverse_n1
received bot command build repo:eessi-2023.06-software arch:aarch64/neoverse_v1 from boegel
- expanded format: build repository:eessi-2023.06-software architecture:aarch64/neoverse_v1
handling command build repository:eessi-2023.06-software architecture:x86_64/generic resulted in:
- submitted job 7428, for details & status see {2023.06}[foss/2021a] R v4.1.0 #328 (comment)
handling command build repository:eessi-2023.06-software architecture:x86_64/intel/haswell resulted in:
- submitted job 7429, for details & status see {2023.06}[foss/2021a] R v4.1.0 #328 (comment)
handling command build repository:eessi-2023.06-software architecture:x86_64/intel/skylake_avx512 resulted in:
- submitted job 7430, for details & status see {2023.06}[foss/2021a] R v4.1.0 #328 (comment)
handling command build repository:eessi-2023.06-software architecture:x86_64/amd/zen2 resulted in:
- submitted job 7431, for details & status see {2023.06}[foss/2021a] R v4.1.0 #328 (comment)
handling command build repository:eessi-2023.06-software architecture:x86_64/amd/zen3 resulted in:
- submitted job 7432, for details & status see {2023.06}[foss/2021a] R v4.1.0 #328 (comment)
handling command build repository:eessi-2023.06-software architecture:aarch64/generic resulted in:
- submitted job 7433, for details & status see {2023.06}[foss/2021a] R v4.1.0 #328 (comment)
handling command build repository:eessi-2023.06-software architecture:aarch64/neoverse_n1 resulted in:
- submitted job 7434, for details & status see {2023.06}[foss/2021a] R v4.1.0 #328 (comment)
handling command build repository:eessi-2023.06-software architecture:aarch64/neoverse_v1 resulted in:
- submitted job 7435, for details & status see {2023.06}[foss/2021a] R v4.1.0 #328 (comment)

eessi-bot-aws · 2023-09-19T13:37:11Z

New job on instance eessi-bot-citc-aws for architecture x86_64-generic for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.09/pr_328/7428

date	job status	comment
Sep 19 13:37:10 UTC 2023	submitted	job id `7428` awaits release by job manager
Sep 19 13:37:56 UTC 2023	released	job awaits launch by Slurm scheduler
Sep 19 13:41:20 UTC 2023	running	job `7428` is running
Sep 19 15:58:24 UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-7428.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1695138902.tar.gz` size: 116 MiB (122149357 bytes) entries: 9463 modules under 2023.06/software/linux/x86_64/generic/modules/all `cairo/1.16.0-GCCcore-10.3.0.lua` `FLAC/1.3.3-GCCcore-10.3.0.lua` `FriBidi/1.0.10-GCCcore-10.3.0.lua` `Ghostscript/9.54.0-GCCcore-10.3.0.lua` `GLPK/5.0-GCCcore-10.3.0.lua` `GObject-Introspection/1.68.0-GCCcore-10.3.0.lua` `GSL/2.7-GCC-10.3.0.lua` `HarfBuzz/2.8.1-GCCcore-10.3.0.lua` `ImageMagick/7.0.11-14-GCCcore-10.3.0.lua` `libgit2/1.1.0-GCCcore-10.3.0.lua` `libogg/1.3.4-GCCcore-10.3.0.lua` `libsndfile/1.0.31-GCCcore-10.3.0.lua` `libvorbis/1.3.7-GCCcore-10.3.0.lua` `LittleCMS/2.12-GCCcore-10.3.0.lua` `nettle/3.7.2-GCCcore-10.3.0.lua` `NLopt/2.7.0-GCCcore-10.3.0.lua` `nodejs/14.17.0-GCCcore-10.3.0.lua` `Pango/1.48.5-GCCcore-10.3.0.lua` `pixman/0.40.0-GCCcore-10.3.0.lua` `Tk/8.6.11-GCCcore-10.3.0.lua` `UDUNITS/2.2.28-GCCcore-10.3.0.lua` `Xvfb/1.20.11-GCCcore-10.3.0.lua` software under 2023.06/software/linux/x86_64/generic/software `cairo/1.16.0-GCCcore-10.3.0` `FLAC/1.3.3-GCCcore-10.3.0` `FriBidi/1.0.10-GCCcore-10.3.0` `Ghostscript/9.54.0-GCCcore-10.3.0` `GLPK/5.0-GCCcore-10.3.0` `GObject-Introspection/1.68.0-GCCcore-10.3.0` `GSL/2.7-GCC-10.3.0` `HarfBuzz/2.8.1-GCCcore-10.3.0` `ImageMagick/7.0.11-14-GCCcore-10.3.0` `libgit2/1.1.0-GCCcore-10.3.0` `libogg/1.3.4-GCCcore-10.3.0` `libsndfile/1.0.31-GCCcore-10.3.0` `libvorbis/1.3.7-GCCcore-10.3.0` `LittleCMS/2.12-GCCcore-10.3.0` `nettle/3.7.2-GCCcore-10.3.0` `NLopt/2.7.0-GCCcore-10.3.0` `nodejs/14.17.0-GCCcore-10.3.0` `Pango/1.48.5-GCCcore-10.3.0` `pixman/0.40.0-GCCcore-10.3.0` `Tk/8.6.11-GCCcore-10.3.0` `UDUNITS/2.2.28-GCCcore-10.3.0` `Xvfb/1.20.11-GCCcore-10.3.0` other under 2023.06/software/linux/x86_64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

eessi-bot-aws · 2023-09-19T13:37:18Z

New job on instance eessi-bot-citc-aws for architecture x86_64-intel-haswell for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.09/pr_328/7429

date	job status	comment
Sep 19 13:37:17 UTC 2023	submitted	job id `7429` awaits release by job manager
Sep 19 13:37:54 UTC 2023	released	job awaits launch by Slurm scheduler
Sep 19 13:41:18 UTC 2023	running	job `7429` is running
Sep 19 14:01:33 UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-7429.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-haswell-1695132036.tar.gz` size: 19 MiB (20322198 bytes) entries: 1140 modules under 2023.06/software/linux/x86_64/intel/haswell/modules/all `cairo/1.16.0-GCCcore-10.3.0.lua` `nettle/3.7.2-GCCcore-10.3.0.lua` `pixman/0.40.0-GCCcore-10.3.0.lua` `Xvfb/1.20.11-GCCcore-10.3.0.lua` software under 2023.06/software/linux/x86_64/intel/haswell/software `cairo/1.16.0-GCCcore-10.3.0` `nettle/3.7.2-GCCcore-10.3.0` `pixman/0.40.0-GCCcore-10.3.0` `Xvfb/1.20.11-GCCcore-10.3.0` other under 2023.06/software/linux/x86_64/intel/haswell `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

eessi-bot-aws · 2023-09-19T13:37:25Z

New job on instance eessi-bot-citc-aws for architecture x86_64-intel-skylake_avx512 for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.09/pr_328/7430

date	job status	comment
Sep 19 13:37:24 UTC 2023	submitted	job id `7430` awaits release by job manager
Sep 19 13:37:52 UTC 2023	released	job awaits launch by Slurm scheduler
Sep 19 13:41:16 UTC 2023	running	job `7430` is running
Sep 19 14:14:24 UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-7430.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1695132791.tar.gz` size: 69 MiB (73114122 bytes) entries: 3424 modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all `cairo/1.16.0-GCCcore-10.3.0.lua` `FLAC/1.3.3-GCCcore-10.3.0.lua` `Ghostscript/9.54.0-GCCcore-10.3.0.lua` `GLPK/5.0-GCCcore-10.3.0.lua` `GSL/2.7-GCC-10.3.0.lua` `libogg/1.3.4-GCCcore-10.3.0.lua` `libsndfile/1.0.31-GCCcore-10.3.0.lua` `libvorbis/1.3.7-GCCcore-10.3.0.lua` `nettle/3.7.2-GCCcore-10.3.0.lua` `NLopt/2.7.0-GCCcore-10.3.0.lua` `pixman/0.40.0-GCCcore-10.3.0.lua` `Tk/8.6.11-GCCcore-10.3.0.lua` `UDUNITS/2.2.28-GCCcore-10.3.0.lua` `Xvfb/1.20.11-GCCcore-10.3.0.lua` software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software `cairo/1.16.0-GCCcore-10.3.0` `FLAC/1.3.3-GCCcore-10.3.0` `Ghostscript/9.54.0-GCCcore-10.3.0` `GLPK/5.0-GCCcore-10.3.0` `GSL/2.7-GCC-10.3.0` `libogg/1.3.4-GCCcore-10.3.0` `libsndfile/1.0.31-GCCcore-10.3.0` `libvorbis/1.3.7-GCCcore-10.3.0` `nettle/3.7.2-GCCcore-10.3.0` `NLopt/2.7.0-GCCcore-10.3.0` `pixman/0.40.0-GCCcore-10.3.0` `Tk/8.6.11-GCCcore-10.3.0` `UDUNITS/2.2.28-GCCcore-10.3.0` `Xvfb/1.20.11-GCCcore-10.3.0` other under 2023.06/software/linux/x86_64/intel/skylake_avx512 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

eessi-bot-aws · 2023-09-19T13:37:32Z

New job on instance eessi-bot-citc-aws for architecture x86_64-amd-zen2 for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.09/pr_328/7431

date	job status	comment
Sep 19 13:37:31 UTC 2023	submitted	job id `7431` awaits release by job manager
Sep 19 13:37:49 UTC 2023	released	job awaits launch by Slurm scheduler
Sep 19 13:41:14 UTC 2023	running	job `7431` is running
Sep 19 15:45:40 UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-7431.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1695138239.tar.gz` size: 117 MiB (123635079 bytes) entries: 9463 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `cairo/1.16.0-GCCcore-10.3.0.lua` `FLAC/1.3.3-GCCcore-10.3.0.lua` `FriBidi/1.0.10-GCCcore-10.3.0.lua` `Ghostscript/9.54.0-GCCcore-10.3.0.lua` `GLPK/5.0-GCCcore-10.3.0.lua` `GObject-Introspection/1.68.0-GCCcore-10.3.0.lua` `GSL/2.7-GCC-10.3.0.lua` `HarfBuzz/2.8.1-GCCcore-10.3.0.lua` `ImageMagick/7.0.11-14-GCCcore-10.3.0.lua` `libgit2/1.1.0-GCCcore-10.3.0.lua` `libogg/1.3.4-GCCcore-10.3.0.lua` `libsndfile/1.0.31-GCCcore-10.3.0.lua` `libvorbis/1.3.7-GCCcore-10.3.0.lua` `LittleCMS/2.12-GCCcore-10.3.0.lua` `nettle/3.7.2-GCCcore-10.3.0.lua` `NLopt/2.7.0-GCCcore-10.3.0.lua` `nodejs/14.17.0-GCCcore-10.3.0.lua` `Pango/1.48.5-GCCcore-10.3.0.lua` `pixman/0.40.0-GCCcore-10.3.0.lua` `Tk/8.6.11-GCCcore-10.3.0.lua` `UDUNITS/2.2.28-GCCcore-10.3.0.lua` `Xvfb/1.20.11-GCCcore-10.3.0.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `cairo/1.16.0-GCCcore-10.3.0` `FLAC/1.3.3-GCCcore-10.3.0` `FriBidi/1.0.10-GCCcore-10.3.0` `Ghostscript/9.54.0-GCCcore-10.3.0` `GLPK/5.0-GCCcore-10.3.0` `GObject-Introspection/1.68.0-GCCcore-10.3.0` `GSL/2.7-GCC-10.3.0` `HarfBuzz/2.8.1-GCCcore-10.3.0` `ImageMagick/7.0.11-14-GCCcore-10.3.0` `libgit2/1.1.0-GCCcore-10.3.0` `libogg/1.3.4-GCCcore-10.3.0` `libsndfile/1.0.31-GCCcore-10.3.0` `libvorbis/1.3.7-GCCcore-10.3.0` `LittleCMS/2.12-GCCcore-10.3.0` `nettle/3.7.2-GCCcore-10.3.0` `NLopt/2.7.0-GCCcore-10.3.0` `nodejs/14.17.0-GCCcore-10.3.0` `Pango/1.48.5-GCCcore-10.3.0` `pixman/0.40.0-GCCcore-10.3.0` `Tk/8.6.11-GCCcore-10.3.0` `UDUNITS/2.2.28-GCCcore-10.3.0` `Xvfb/1.20.11-GCCcore-10.3.0` other under 2023.06/software/linux/x86_64/amd/zen2 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

eessi-bot-aws · 2023-09-19T13:37:39Z

New job on instance eessi-bot-citc-aws for architecture x86_64-amd-zen3 for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.09/pr_328/7432

date	job status	comment
Sep 19 13:37:38 UTC 2023	submitted	job id `7432` awaits release by job manager
Sep 19 13:37:47 UTC 2023	released	job awaits launch by Slurm scheduler
Sep 19 13:41:11 UTC 2023	running	job `7432` is running
Sep 19 14:13:15 UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-7432.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen3-1695132703.tar.gz` size: 69 MiB (73079397 bytes) entries: 3424 modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all `cairo/1.16.0-GCCcore-10.3.0.lua` `FLAC/1.3.3-GCCcore-10.3.0.lua` `Ghostscript/9.54.0-GCCcore-10.3.0.lua` `GLPK/5.0-GCCcore-10.3.0.lua` `GSL/2.7-GCC-10.3.0.lua` `libogg/1.3.4-GCCcore-10.3.0.lua` `libsndfile/1.0.31-GCCcore-10.3.0.lua` `libvorbis/1.3.7-GCCcore-10.3.0.lua` `nettle/3.7.2-GCCcore-10.3.0.lua` `NLopt/2.7.0-GCCcore-10.3.0.lua` `pixman/0.40.0-GCCcore-10.3.0.lua` `Tk/8.6.11-GCCcore-10.3.0.lua` `UDUNITS/2.2.28-GCCcore-10.3.0.lua` `Xvfb/1.20.11-GCCcore-10.3.0.lua` software under 2023.06/software/linux/x86_64/amd/zen3/software `cairo/1.16.0-GCCcore-10.3.0` `FLAC/1.3.3-GCCcore-10.3.0` `Ghostscript/9.54.0-GCCcore-10.3.0` `GLPK/5.0-GCCcore-10.3.0` `GSL/2.7-GCC-10.3.0` `libogg/1.3.4-GCCcore-10.3.0` `libsndfile/1.0.31-GCCcore-10.3.0` `libvorbis/1.3.7-GCCcore-10.3.0` `nettle/3.7.2-GCCcore-10.3.0` `NLopt/2.7.0-GCCcore-10.3.0` `pixman/0.40.0-GCCcore-10.3.0` `Tk/8.6.11-GCCcore-10.3.0` `UDUNITS/2.2.28-GCCcore-10.3.0` `Xvfb/1.20.11-GCCcore-10.3.0` other under 2023.06/software/linux/x86_64/amd/zen3 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

eessi-bot-aws · 2023-09-19T13:37:45Z

New job on instance eessi-bot-citc-aws for architecture aarch64-generic for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.09/pr_328/7433

date	job status	comment
Sep 19 13:37:45 UTC 2023	submitted	job id `7433` awaits release by job manager
Sep 19 13:39:05 UTC 2023	released	job awaits launch by Slurm scheduler
Sep 19 13:42:34 UTC 2023	running	job `7433` is running
Sep 19 15:32:45 UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-7433.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1695137438.tar.gz` size: 115 MiB (121451541 bytes) entries: 9463 modules under 2023.06/software/linux/aarch64/generic/modules/all `cairo/1.16.0-GCCcore-10.3.0.lua` `FLAC/1.3.3-GCCcore-10.3.0.lua` `FriBidi/1.0.10-GCCcore-10.3.0.lua` `Ghostscript/9.54.0-GCCcore-10.3.0.lua` `GLPK/5.0-GCCcore-10.3.0.lua` `GObject-Introspection/1.68.0-GCCcore-10.3.0.lua` `GSL/2.7-GCC-10.3.0.lua` `HarfBuzz/2.8.1-GCCcore-10.3.0.lua` `ImageMagick/7.0.11-14-GCCcore-10.3.0.lua` `libgit2/1.1.0-GCCcore-10.3.0.lua` `libogg/1.3.4-GCCcore-10.3.0.lua` `libsndfile/1.0.31-GCCcore-10.3.0.lua` `libvorbis/1.3.7-GCCcore-10.3.0.lua` `LittleCMS/2.12-GCCcore-10.3.0.lua` `nettle/3.7.2-GCCcore-10.3.0.lua` `NLopt/2.7.0-GCCcore-10.3.0.lua` `nodejs/14.17.0-GCCcore-10.3.0.lua` `Pango/1.48.5-GCCcore-10.3.0.lua` `pixman/0.40.0-GCCcore-10.3.0.lua` `Tk/8.6.11-GCCcore-10.3.0.lua` `UDUNITS/2.2.28-GCCcore-10.3.0.lua` `Xvfb/1.20.11-GCCcore-10.3.0.lua` software under 2023.06/software/linux/aarch64/generic/software `cairo/1.16.0-GCCcore-10.3.0` `FLAC/1.3.3-GCCcore-10.3.0` `FriBidi/1.0.10-GCCcore-10.3.0` `Ghostscript/9.54.0-GCCcore-10.3.0` `GLPK/5.0-GCCcore-10.3.0` `GObject-Introspection/1.68.0-GCCcore-10.3.0` `GSL/2.7-GCC-10.3.0` `HarfBuzz/2.8.1-GCCcore-10.3.0` `ImageMagick/7.0.11-14-GCCcore-10.3.0` `libgit2/1.1.0-GCCcore-10.3.0` `libogg/1.3.4-GCCcore-10.3.0` `libsndfile/1.0.31-GCCcore-10.3.0` `libvorbis/1.3.7-GCCcore-10.3.0` `LittleCMS/2.12-GCCcore-10.3.0` `nettle/3.7.2-GCCcore-10.3.0` `NLopt/2.7.0-GCCcore-10.3.0` `nodejs/14.17.0-GCCcore-10.3.0` `Pango/1.48.5-GCCcore-10.3.0` `pixman/0.40.0-GCCcore-10.3.0` `Tk/8.6.11-GCCcore-10.3.0` `UDUNITS/2.2.28-GCCcore-10.3.0` `Xvfb/1.20.11-GCCcore-10.3.0` other under 2023.06/software/linux/aarch64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

eessi-bot-aws · 2023-09-19T13:37:52Z

New job on instance eessi-bot-citc-aws for architecture aarch64-neoverse_n1 for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.09/pr_328/7434

date	job status	comment
Sep 19 13:37:51 UTC 2023	submitted	job id `7434` awaits release by job manager
Sep 19 13:39:02 UTC 2023	released	job awaits launch by Slurm scheduler
Sep 19 13:42:32 UTC 2023	running	job `7434` is running
Sep 19 15:32:43 UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-7434.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_n1-1695137423.tar.gz` size: 115 MiB (121385658 bytes) entries: 9463 modules under 2023.06/software/linux/aarch64/neoverse_n1/modules/all `cairo/1.16.0-GCCcore-10.3.0.lua` `FLAC/1.3.3-GCCcore-10.3.0.lua` `FriBidi/1.0.10-GCCcore-10.3.0.lua` `Ghostscript/9.54.0-GCCcore-10.3.0.lua` `GLPK/5.0-GCCcore-10.3.0.lua` `GObject-Introspection/1.68.0-GCCcore-10.3.0.lua` `GSL/2.7-GCC-10.3.0.lua` `HarfBuzz/2.8.1-GCCcore-10.3.0.lua` `ImageMagick/7.0.11-14-GCCcore-10.3.0.lua` `libgit2/1.1.0-GCCcore-10.3.0.lua` `libogg/1.3.4-GCCcore-10.3.0.lua` `libsndfile/1.0.31-GCCcore-10.3.0.lua` `libvorbis/1.3.7-GCCcore-10.3.0.lua` `LittleCMS/2.12-GCCcore-10.3.0.lua` `nettle/3.7.2-GCCcore-10.3.0.lua` `NLopt/2.7.0-GCCcore-10.3.0.lua` `nodejs/14.17.0-GCCcore-10.3.0.lua` `Pango/1.48.5-GCCcore-10.3.0.lua` `pixman/0.40.0-GCCcore-10.3.0.lua` `Tk/8.6.11-GCCcore-10.3.0.lua` `UDUNITS/2.2.28-GCCcore-10.3.0.lua` `Xvfb/1.20.11-GCCcore-10.3.0.lua` software under 2023.06/software/linux/aarch64/neoverse_n1/software `cairo/1.16.0-GCCcore-10.3.0` `FLAC/1.3.3-GCCcore-10.3.0` `FriBidi/1.0.10-GCCcore-10.3.0` `Ghostscript/9.54.0-GCCcore-10.3.0` `GLPK/5.0-GCCcore-10.3.0` `GObject-Introspection/1.68.0-GCCcore-10.3.0` `GSL/2.7-GCC-10.3.0` `HarfBuzz/2.8.1-GCCcore-10.3.0` `ImageMagick/7.0.11-14-GCCcore-10.3.0` `libgit2/1.1.0-GCCcore-10.3.0` `libogg/1.3.4-GCCcore-10.3.0` `libsndfile/1.0.31-GCCcore-10.3.0` `libvorbis/1.3.7-GCCcore-10.3.0` `LittleCMS/2.12-GCCcore-10.3.0` `nettle/3.7.2-GCCcore-10.3.0` `NLopt/2.7.0-GCCcore-10.3.0` `nodejs/14.17.0-GCCcore-10.3.0` `Pango/1.48.5-GCCcore-10.3.0` `pixman/0.40.0-GCCcore-10.3.0` `Tk/8.6.11-GCCcore-10.3.0` `UDUNITS/2.2.28-GCCcore-10.3.0` `Xvfb/1.20.11-GCCcore-10.3.0` other under 2023.06/software/linux/aarch64/neoverse_n1 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

eessi-bot-aws · 2023-09-19T13:37:59Z

New job on instance eessi-bot-citc-aws for architecture aarch64-neoverse_v1 for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.09/pr_328/7435

date	job status	comment
Sep 19 13:37:58 UTC 2023	submitted	job id `7435` awaits release by job manager
Sep 19 13:39:00 UTC 2023	released	job awaits launch by Slurm scheduler
Sep 19 13:42:29 UTC 2023	running	job `7435` is running
Sep 19 15:18:21 UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-7435.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_v1-1695136568.tar.gz` size: 115 MiB (121382493 bytes) entries: 9463 modules under 2023.06/software/linux/aarch64/neoverse_v1/modules/all `cairo/1.16.0-GCCcore-10.3.0.lua` `FLAC/1.3.3-GCCcore-10.3.0.lua` `FriBidi/1.0.10-GCCcore-10.3.0.lua` `Ghostscript/9.54.0-GCCcore-10.3.0.lua` `GLPK/5.0-GCCcore-10.3.0.lua` `GObject-Introspection/1.68.0-GCCcore-10.3.0.lua` `GSL/2.7-GCC-10.3.0.lua` `HarfBuzz/2.8.1-GCCcore-10.3.0.lua` `ImageMagick/7.0.11-14-GCCcore-10.3.0.lua` `libgit2/1.1.0-GCCcore-10.3.0.lua` `libogg/1.3.4-GCCcore-10.3.0.lua` `libsndfile/1.0.31-GCCcore-10.3.0.lua` `libvorbis/1.3.7-GCCcore-10.3.0.lua` `LittleCMS/2.12-GCCcore-10.3.0.lua` `nettle/3.7.2-GCCcore-10.3.0.lua` `NLopt/2.7.0-GCCcore-10.3.0.lua` `nodejs/14.17.0-GCCcore-10.3.0.lua` `Pango/1.48.5-GCCcore-10.3.0.lua` `pixman/0.40.0-GCCcore-10.3.0.lua` `Tk/8.6.11-GCCcore-10.3.0.lua` `UDUNITS/2.2.28-GCCcore-10.3.0.lua` `Xvfb/1.20.11-GCCcore-10.3.0.lua` software under 2023.06/software/linux/aarch64/neoverse_v1/software `cairo/1.16.0-GCCcore-10.3.0` `FLAC/1.3.3-GCCcore-10.3.0` `FriBidi/1.0.10-GCCcore-10.3.0` `Ghostscript/9.54.0-GCCcore-10.3.0` `GLPK/5.0-GCCcore-10.3.0` `GObject-Introspection/1.68.0-GCCcore-10.3.0` `GSL/2.7-GCC-10.3.0` `HarfBuzz/2.8.1-GCCcore-10.3.0` `ImageMagick/7.0.11-14-GCCcore-10.3.0` `libgit2/1.1.0-GCCcore-10.3.0` `libogg/1.3.4-GCCcore-10.3.0` `libsndfile/1.0.31-GCCcore-10.3.0` `libvorbis/1.3.7-GCCcore-10.3.0` `LittleCMS/2.12-GCCcore-10.3.0` `nettle/3.7.2-GCCcore-10.3.0` `NLopt/2.7.0-GCCcore-10.3.0` `nodejs/14.17.0-GCCcore-10.3.0` `Pango/1.48.5-GCCcore-10.3.0` `pixman/0.40.0-GCCcore-10.3.0` `Tk/8.6.11-GCCcore-10.3.0` `UDUNITS/2.2.28-GCCcore-10.3.0` `Xvfb/1.20.11-GCCcore-10.3.0` other under 2023.06/software/linux/aarch64/neoverse_v1 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

boegel · 2023-09-20T06:41:15Z

installation of testthat fails with compiler errors:

../inst/include/testthat/vendor/catch.h:6495:41: error: array bound is not an integer constant before ] token
 6495 |         static char altStackMem[SIGSTKSZ];
      |                                         ^
../inst/include/testthat/vendor/catch.h: In constructor Catch::FatalConditionHandler::FatalConditionHandler():
../inst/include/testthat/vendor/catch.h:6514:30: error: altStackMem was not declared in this scope
 6514 |             sigStack.ss_sp = altStackMem;
      |                              ^~~~~~~~~~~
../inst/include/testthat/vendor/catch.h: At global scope:
../inst/include/testthat/vendor/catch.h:6546:53: error: array bound is not an integer constant before ] token
 6546 |

It looks like this is fixed in r-lib/testthat#1403, see also r-lib/testthat#1373

edit: see also easybuilders/easybuild-easyconfigs#17175 (but that's only for an ancient R easyconfig)

… pre_single_extension hook that replaces SIGSTKSZ with constant value

boegel · 2023-09-21T10:07:47Z

bot: build repo:eessi-2023.06-software arch:x86_64/generic
bot: build repo:eessi-2023.06-software arch:aarch64/neoverse_v1

eessi-bot-aws · 2023-09-21T10:07:49Z

Updates by the bot instance eessi-bot-citc-aws (click for details)

received bot command build repo:eessi-2023.06-software arch:x86_64/generic from boegel
- expanded format: build repository:eessi-2023.06-software architecture:x86_64/generic
received bot command build repo:eessi-2023.06-software arch:aarch64/neoverse_v1 from boegel
- expanded format: build repository:eessi-2023.06-software architecture:aarch64/neoverse_v1
handling command build repository:eessi-2023.06-software architecture:x86_64/generic resulted in:
- submitted job 7454, for details & status see {2023.06}[foss/2021a] R v4.1.0 #328 (comment)
handling command build repository:eessi-2023.06-software architecture:aarch64/neoverse_v1 resulted in:
- submitted job 7455, for details & status see {2023.06}[foss/2021a] R v4.1.0 #328 (comment)

boegel · 2023-09-26T19:27:07Z

bot: build repo:eessi-2023.06-software arch:aarch64/neoverse_v1

eessi-bot-aws · 2023-09-26T19:27:09Z

Updates by the bot instance eessi-bot-citc-aws (click for details)

received bot command build repo:eessi-2023.06-software arch:aarch64/neoverse_v1 from boegel
- expanded format: build repository:eessi-2023.06-software architecture:aarch64/neoverse_v1
handling command build repository:eessi-2023.06-software architecture:aarch64/neoverse_v1 resulted in:
- submitted job 7570, for details & status see {2023.06}[foss/2021a] R v4.1.0 #328 (comment)

eessi-bot-aws · 2023-09-26T19:27:16Z

New job on instance eessi-bot-citc-aws for architecture aarch64-neoverse_v1 for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.09/pr_328/7570

date	job status	comment
Sep 26 19:27:15 UTC 2023	submitted	job id `7570` awaits release by job manager
Sep 26 19:27:45 UTC 2023	released	job awaits launch by Slurm scheduler
Sep 26 19:28:51 UTC 2023	running	job `7570` is running
Sep 26 21:55:34 UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-7570.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_v1-1695765184.tar.gz` size: 115 MiB (121401022 bytes) entries: 9463 modules under 2023.06/software/linux/aarch64/neoverse_v1/modules/all `cairo/1.16.0-GCCcore-10.3.0.lua` `FLAC/1.3.3-GCCcore-10.3.0.lua` `FriBidi/1.0.10-GCCcore-10.3.0.lua` `Ghostscript/9.54.0-GCCcore-10.3.0.lua` `GLPK/5.0-GCCcore-10.3.0.lua` `GObject-Introspection/1.68.0-GCCcore-10.3.0.lua` `GSL/2.7-GCC-10.3.0.lua` `HarfBuzz/2.8.1-GCCcore-10.3.0.lua` `ImageMagick/7.0.11-14-GCCcore-10.3.0.lua` `libgit2/1.1.0-GCCcore-10.3.0.lua` `libogg/1.3.4-GCCcore-10.3.0.lua` `libsndfile/1.0.31-GCCcore-10.3.0.lua` `libvorbis/1.3.7-GCCcore-10.3.0.lua` `LittleCMS/2.12-GCCcore-10.3.0.lua` `nettle/3.7.2-GCCcore-10.3.0.lua` `NLopt/2.7.0-GCCcore-10.3.0.lua` `nodejs/14.17.0-GCCcore-10.3.0.lua` `Pango/1.48.5-GCCcore-10.3.0.lua` `pixman/0.40.0-GCCcore-10.3.0.lua` `Tk/8.6.11-GCCcore-10.3.0.lua` `UDUNITS/2.2.28-GCCcore-10.3.0.lua` `Xvfb/1.20.11-GCCcore-10.3.0.lua` software under 2023.06/software/linux/aarch64/neoverse_v1/software `cairo/1.16.0-GCCcore-10.3.0` `FLAC/1.3.3-GCCcore-10.3.0` `FriBidi/1.0.10-GCCcore-10.3.0` `Ghostscript/9.54.0-GCCcore-10.3.0` `GLPK/5.0-GCCcore-10.3.0` `GObject-Introspection/1.68.0-GCCcore-10.3.0` `GSL/2.7-GCC-10.3.0` `HarfBuzz/2.8.1-GCCcore-10.3.0` `ImageMagick/7.0.11-14-GCCcore-10.3.0` `libgit2/1.1.0-GCCcore-10.3.0` `libogg/1.3.4-GCCcore-10.3.0` `libsndfile/1.0.31-GCCcore-10.3.0` `libvorbis/1.3.7-GCCcore-10.3.0` `LittleCMS/2.12-GCCcore-10.3.0` `nettle/3.7.2-GCCcore-10.3.0` `NLopt/2.7.0-GCCcore-10.3.0` `nodejs/14.17.0-GCCcore-10.3.0` `Pango/1.48.5-GCCcore-10.3.0` `pixman/0.40.0-GCCcore-10.3.0` `Tk/8.6.11-GCCcore-10.3.0` `UDUNITS/2.2.28-GCCcore-10.3.0` `Xvfb/1.20.11-GCCcore-10.3.0` other under 2023.06/software/linux/aarch64/neoverse_v1 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

bedroge · 2023-09-26T19:35:21Z

It's not impossible that there's a relation to a known unfixed bug in EasyBuild here, where the temporary directory used during an installation gets progressively deeper as more installations are being performed, see easybuilders/easybuild-framework#4291.

If it's indeed this bug causing issues here, you should be able to work around it by explicitly setting the EB temp dir. That solved the problem for me with our local installation scripts.

boegel · 2023-09-26T20:21:59Z

bot: build repo:eessi-2023.06-software arch:x86_64/generic
bot: build repo:eessi-2023.06-software arch:x86_64/intel/haswell
bot: build repo:eessi-2023.06-software arch:x86_64/intel/skylake_avx512
bot: build repo:eessi-2023.06-software arch:x86_64/amd/zen2
bot: build repo:eessi-2023.06-software arch:x86_64/amd/zen3
bot: build repo:eessi-2023.06-software arch:aarch64/generic
bot: build repo:eessi-2023.06-software arch:aarch64/neoverse_n1

eessi-bot-aws · 2023-09-26T20:22:02Z

Updates by the bot instance eessi-bot-citc-aws (click for details)

received bot command build repo:eessi-2023.06-software arch:x86_64/generic from boegel
- expanded format: build repository:eessi-2023.06-software architecture:x86_64/generic
received bot command build repo:eessi-2023.06-software arch:x86_64/intel/haswell from boegel
- expanded format: build repository:eessi-2023.06-software architecture:x86_64/intel/haswell
received bot command build repo:eessi-2023.06-software arch:x86_64/intel/skylake_avx512 from boegel
- expanded format: build repository:eessi-2023.06-software architecture:x86_64/intel/skylake_avx512
received bot command build repo:eessi-2023.06-software arch:x86_64/amd/zen2 from boegel
- expanded format: build repository:eessi-2023.06-software architecture:x86_64/amd/zen2
received bot command build repo:eessi-2023.06-software arch:x86_64/amd/zen3 from boegel
- expanded format: build repository:eessi-2023.06-software architecture:x86_64/amd/zen3
received bot command build repo:eessi-2023.06-software arch:aarch64/generic from boegel
- expanded format: build repository:eessi-2023.06-software architecture:aarch64/generic
received bot command build repo:eessi-2023.06-software arch:aarch64/neoverse_n1 from boegel
- expanded format: build repository:eessi-2023.06-software architecture:aarch64/neoverse_n1
handling command build repository:eessi-2023.06-software architecture:x86_64/generic resulted in:
- submitted job 7574, for details & status see {2023.06}[foss/2021a] R v4.1.0 #328 (comment)
handling command build repository:eessi-2023.06-software architecture:x86_64/intel/haswell resulted in:
- submitted job 7576, for details & status see {2023.06}[foss/2021a] R v4.1.0 #328 (comment)
handling command build repository:eessi-2023.06-software architecture:x86_64/intel/skylake_avx512 resulted in:
- submitted job 7578, for details & status see {2023.06}[foss/2021a] R v4.1.0 #328 (comment)
handling command build repository:eessi-2023.06-software architecture:x86_64/amd/zen2 resulted in:
- submitted job 7580, for details & status see {2023.06}[foss/2021a] R v4.1.0 #328 (comment)
handling command build repository:eessi-2023.06-software architecture:x86_64/amd/zen3 resulted in:
- submitted job 7582, for details & status see {2023.06}[foss/2021a] R v4.1.0 #328 (comment)
handling command build repository:eessi-2023.06-software architecture:aarch64/generic resulted in:
- submitted job 7583, for details & status see {2023.06}[foss/2021a] R v4.1.0 #328 (comment)
handling command build repository:eessi-2023.06-software architecture:aarch64/neoverse_n1 resulted in:
- submitted job 7584, for details & status see {2023.06}[foss/2021a] R v4.1.0 #328 (comment)

eessi-bot-aws · 2023-09-26T20:22:09Z

New job on instance eessi-bot-citc-aws for architecture x86_64-generic for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.09/pr_328/7574

date	job status	comment
Sep 26 20:22:08 UTC 2023	submitted	job id `7574` awaits release by job manager
Sep 26 20:23:16 UTC 2023	released	job awaits launch by Slurm scheduler
Sep 26 20:26:02 UTC 2023	running	job `7574` is running
Sep 27 03:33:19 UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-7574.out` ❌ found message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1695785414.tar.gz` size: 1383 MiB (1450338596 bytes) entries: 72190 modules under 2023.06/software/linux/x86_64/generic/modules/all `cairo/1.16.0-GCCcore-10.3.0.lua` `FLAC/1.3.3-GCCcore-10.3.0.lua` `FriBidi/1.0.10-GCCcore-10.3.0.lua` `Ghostscript/9.54.0-GCCcore-10.3.0.lua` `GLPK/5.0-GCCcore-10.3.0.lua` `GObject-Introspection/1.68.0-GCCcore-10.3.0.lua` `GSL/2.7-GCC-10.3.0.lua` `HarfBuzz/2.8.1-GCCcore-10.3.0.lua` `ImageMagick/7.0.11-14-GCCcore-10.3.0.lua` `libgit2/1.1.0-GCCcore-10.3.0.lua` `libogg/1.3.4-GCCcore-10.3.0.lua` `libsndfile/1.0.31-GCCcore-10.3.0.lua` `libvorbis/1.3.7-GCCcore-10.3.0.lua` `LittleCMS/2.12-GCCcore-10.3.0.lua` `nettle/3.7.2-GCCcore-10.3.0.lua` `NLopt/2.7.0-GCCcore-10.3.0.lua` `nodejs/14.17.0-GCCcore-10.3.0.lua` `Pango/1.48.5-GCCcore-10.3.0.lua` `pixman/0.40.0-GCCcore-10.3.0.lua` `R/4.1.0-foss-2021a.lua` `Tk/8.6.11-GCCcore-10.3.0.lua` `UDUNITS/2.2.28-GCCcore-10.3.0.lua` `Xvfb/1.20.11-GCCcore-10.3.0.lua` software under 2023.06/software/linux/x86_64/generic/software `cairo/1.16.0-GCCcore-10.3.0` `FLAC/1.3.3-GCCcore-10.3.0` `FriBidi/1.0.10-GCCcore-10.3.0` `Ghostscript/9.54.0-GCCcore-10.3.0` `GLPK/5.0-GCCcore-10.3.0` `GObject-Introspection/1.68.0-GCCcore-10.3.0` `GSL/2.7-GCC-10.3.0` `HarfBuzz/2.8.1-GCCcore-10.3.0` `ImageMagick/7.0.11-14-GCCcore-10.3.0` `libgit2/1.1.0-GCCcore-10.3.0` `libogg/1.3.4-GCCcore-10.3.0` `libsndfile/1.0.31-GCCcore-10.3.0` `libvorbis/1.3.7-GCCcore-10.3.0` `LittleCMS/2.12-GCCcore-10.3.0` `nettle/3.7.2-GCCcore-10.3.0` `NLopt/2.7.0-GCCcore-10.3.0` `nodejs/14.17.0-GCCcore-10.3.0` `Pango/1.48.5-GCCcore-10.3.0` `pixman/0.40.0-GCCcore-10.3.0` `R/4.1.0-foss-2021a` `Tk/8.6.11-GCCcore-10.3.0` `UDUNITS/2.2.28-GCCcore-10.3.0` `Xvfb/1.20.11-GCCcore-10.3.0` other under 2023.06/software/linux/x86_64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

eessi-bot-aws · 2023-09-26T20:22:15Z

New job on instance eessi-bot-citc-aws for architecture x86_64-intel-haswell for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.09/pr_328/7576

date	job status	comment
Sep 26 20:22:14 UTC 2023	submitted	job id `7576` awaits release by job manager
Sep 26 20:23:10 UTC 2023	released	job awaits launch by Slurm scheduler
Sep 26 20:25:56 UTC 2023	running	job `7576` is running
Sep 27 03:30:57 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7576.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-haswell-1695785273.tar.gz` size: 1386 MiB (1454118167 bytes) entries: 72190 modules under 2023.06/software/linux/x86_64/intel/haswell/modules/all `cairo/1.16.0-GCCcore-10.3.0.lua` `FLAC/1.3.3-GCCcore-10.3.0.lua` `FriBidi/1.0.10-GCCcore-10.3.0.lua` `Ghostscript/9.54.0-GCCcore-10.3.0.lua` `GLPK/5.0-GCCcore-10.3.0.lua` `GObject-Introspection/1.68.0-GCCcore-10.3.0.lua` `GSL/2.7-GCC-10.3.0.lua` `HarfBuzz/2.8.1-GCCcore-10.3.0.lua` `ImageMagick/7.0.11-14-GCCcore-10.3.0.lua` `libgit2/1.1.0-GCCcore-10.3.0.lua` `libogg/1.3.4-GCCcore-10.3.0.lua` `libsndfile/1.0.31-GCCcore-10.3.0.lua` `libvorbis/1.3.7-GCCcore-10.3.0.lua` `LittleCMS/2.12-GCCcore-10.3.0.lua` `nettle/3.7.2-GCCcore-10.3.0.lua` `NLopt/2.7.0-GCCcore-10.3.0.lua` `nodejs/14.17.0-GCCcore-10.3.0.lua` `Pango/1.48.5-GCCcore-10.3.0.lua` `pixman/0.40.0-GCCcore-10.3.0.lua` `R/4.1.0-foss-2021a.lua` `Tk/8.6.11-GCCcore-10.3.0.lua` `UDUNITS/2.2.28-GCCcore-10.3.0.lua` `Xvfb/1.20.11-GCCcore-10.3.0.lua` software under 2023.06/software/linux/x86_64/intel/haswell/software `cairo/1.16.0-GCCcore-10.3.0` `FLAC/1.3.3-GCCcore-10.3.0` `FriBidi/1.0.10-GCCcore-10.3.0` `Ghostscript/9.54.0-GCCcore-10.3.0` `GLPK/5.0-GCCcore-10.3.0` `GObject-Introspection/1.68.0-GCCcore-10.3.0` `GSL/2.7-GCC-10.3.0` `HarfBuzz/2.8.1-GCCcore-10.3.0` `ImageMagick/7.0.11-14-GCCcore-10.3.0` `libgit2/1.1.0-GCCcore-10.3.0` `libogg/1.3.4-GCCcore-10.3.0` `libsndfile/1.0.31-GCCcore-10.3.0` `libvorbis/1.3.7-GCCcore-10.3.0` `LittleCMS/2.12-GCCcore-10.3.0` `nettle/3.7.2-GCCcore-10.3.0` `NLopt/2.7.0-GCCcore-10.3.0` `nodejs/14.17.0-GCCcore-10.3.0` `Pango/1.48.5-GCCcore-10.3.0` `pixman/0.40.0-GCCcore-10.3.0` `R/4.1.0-foss-2021a` `Tk/8.6.11-GCCcore-10.3.0` `UDUNITS/2.2.28-GCCcore-10.3.0` `Xvfb/1.20.11-GCCcore-10.3.0` other under 2023.06/software/linux/x86_64/intel/haswell `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Sep 29 07:35:38 UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-haswell-1695785273.tar.gz` to S3 bucket succeeded

eessi-bot-aws · 2023-09-26T20:22:22Z

New job on instance eessi-bot-citc-aws for architecture x86_64-intel-skylake_avx512 for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.09/pr_328/7578

date	job status	comment
Sep 26 20:22:21 UTC 2023	submitted	job id `7578` awaits release by job manager
Sep 26 20:23:05 UTC 2023	released	job awaits launch by Slurm scheduler
Sep 26 20:25:54 UTC 2023	running	job `7578` is running
Sep 26 23:44:22 UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-7578.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1695771763.tar.gz` size: 117 MiB (123654764 bytes) entries: 9463 modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all `cairo/1.16.0-GCCcore-10.3.0.lua` `FLAC/1.3.3-GCCcore-10.3.0.lua` `FriBidi/1.0.10-GCCcore-10.3.0.lua` `Ghostscript/9.54.0-GCCcore-10.3.0.lua` `GLPK/5.0-GCCcore-10.3.0.lua` `GObject-Introspection/1.68.0-GCCcore-10.3.0.lua` `GSL/2.7-GCC-10.3.0.lua` `HarfBuzz/2.8.1-GCCcore-10.3.0.lua` `ImageMagick/7.0.11-14-GCCcore-10.3.0.lua` `libgit2/1.1.0-GCCcore-10.3.0.lua` `libogg/1.3.4-GCCcore-10.3.0.lua` `libsndfile/1.0.31-GCCcore-10.3.0.lua` `libvorbis/1.3.7-GCCcore-10.3.0.lua` `LittleCMS/2.12-GCCcore-10.3.0.lua` `nettle/3.7.2-GCCcore-10.3.0.lua` `NLopt/2.7.0-GCCcore-10.3.0.lua` `nodejs/14.17.0-GCCcore-10.3.0.lua` `Pango/1.48.5-GCCcore-10.3.0.lua` `pixman/0.40.0-GCCcore-10.3.0.lua` `Tk/8.6.11-GCCcore-10.3.0.lua` `UDUNITS/2.2.28-GCCcore-10.3.0.lua` `Xvfb/1.20.11-GCCcore-10.3.0.lua` software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software `cairo/1.16.0-GCCcore-10.3.0` `FLAC/1.3.3-GCCcore-10.3.0` `FriBidi/1.0.10-GCCcore-10.3.0` `Ghostscript/9.54.0-GCCcore-10.3.0` `GLPK/5.0-GCCcore-10.3.0` `GObject-Introspection/1.68.0-GCCcore-10.3.0` `GSL/2.7-GCC-10.3.0` `HarfBuzz/2.8.1-GCCcore-10.3.0` `ImageMagick/7.0.11-14-GCCcore-10.3.0` `libgit2/1.1.0-GCCcore-10.3.0` `libogg/1.3.4-GCCcore-10.3.0` `libsndfile/1.0.31-GCCcore-10.3.0` `libvorbis/1.3.7-GCCcore-10.3.0` `LittleCMS/2.12-GCCcore-10.3.0` `nettle/3.7.2-GCCcore-10.3.0` `NLopt/2.7.0-GCCcore-10.3.0` `nodejs/14.17.0-GCCcore-10.3.0` `Pango/1.48.5-GCCcore-10.3.0` `pixman/0.40.0-GCCcore-10.3.0` `Tk/8.6.11-GCCcore-10.3.0` `UDUNITS/2.2.28-GCCcore-10.3.0` `Xvfb/1.20.11-GCCcore-10.3.0` other under 2023.06/software/linux/x86_64/intel/skylake_avx512 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

eessi-bot-aws · 2023-09-26T20:22:28Z

New job on instance eessi-bot-citc-aws for architecture x86_64-amd-zen2 for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.09/pr_328/7580

date	job status	comment
Sep 26 20:22:27 UTC 2023	submitted	job id `7580` awaits release by job manager
Sep 26 20:22:58 UTC 2023	released	job awaits launch by Slurm scheduler
Sep 26 20:25:48 UTC 2023	running	job `7580` is running
Sep 27 02:34:13 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7580.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1695781912.tar.gz` size: 1385 MiB (1452946701 bytes) entries: 72190 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `cairo/1.16.0-GCCcore-10.3.0.lua` `FLAC/1.3.3-GCCcore-10.3.0.lua` `FriBidi/1.0.10-GCCcore-10.3.0.lua` `Ghostscript/9.54.0-GCCcore-10.3.0.lua` `GLPK/5.0-GCCcore-10.3.0.lua` `GObject-Introspection/1.68.0-GCCcore-10.3.0.lua` `GSL/2.7-GCC-10.3.0.lua` `HarfBuzz/2.8.1-GCCcore-10.3.0.lua` `ImageMagick/7.0.11-14-GCCcore-10.3.0.lua` `libgit2/1.1.0-GCCcore-10.3.0.lua` `libogg/1.3.4-GCCcore-10.3.0.lua` `libsndfile/1.0.31-GCCcore-10.3.0.lua` `libvorbis/1.3.7-GCCcore-10.3.0.lua` `LittleCMS/2.12-GCCcore-10.3.0.lua` `nettle/3.7.2-GCCcore-10.3.0.lua` `NLopt/2.7.0-GCCcore-10.3.0.lua` `nodejs/14.17.0-GCCcore-10.3.0.lua` `Pango/1.48.5-GCCcore-10.3.0.lua` `pixman/0.40.0-GCCcore-10.3.0.lua` `R/4.1.0-foss-2021a.lua` `Tk/8.6.11-GCCcore-10.3.0.lua` `UDUNITS/2.2.28-GCCcore-10.3.0.lua` `Xvfb/1.20.11-GCCcore-10.3.0.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `cairo/1.16.0-GCCcore-10.3.0` `FLAC/1.3.3-GCCcore-10.3.0` `FriBidi/1.0.10-GCCcore-10.3.0` `Ghostscript/9.54.0-GCCcore-10.3.0` `GLPK/5.0-GCCcore-10.3.0` `GObject-Introspection/1.68.0-GCCcore-10.3.0` `GSL/2.7-GCC-10.3.0` `HarfBuzz/2.8.1-GCCcore-10.3.0` `ImageMagick/7.0.11-14-GCCcore-10.3.0` `libgit2/1.1.0-GCCcore-10.3.0` `libogg/1.3.4-GCCcore-10.3.0` `libsndfile/1.0.31-GCCcore-10.3.0` `libvorbis/1.3.7-GCCcore-10.3.0` `LittleCMS/2.12-GCCcore-10.3.0` `nettle/3.7.2-GCCcore-10.3.0` `NLopt/2.7.0-GCCcore-10.3.0` `nodejs/14.17.0-GCCcore-10.3.0` `Pango/1.48.5-GCCcore-10.3.0` `pixman/0.40.0-GCCcore-10.3.0` `R/4.1.0-foss-2021a` `Tk/8.6.11-GCCcore-10.3.0` `UDUNITS/2.2.28-GCCcore-10.3.0` `Xvfb/1.20.11-GCCcore-10.3.0` other under 2023.06/software/linux/x86_64/amd/zen2 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Sep 29 07:34:59 UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-amd-zen2-1695781912.tar.gz` to S3 bucket succeeded

eessi-bot-aws · 2023-09-26T20:22:35Z

New job on instance eessi-bot-citc-aws for architecture x86_64-amd-zen3 for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.09/pr_328/7582

date	job status	comment
Sep 26 20:22:34 UTC 2023	submitted	job id `7582` awaits release by job manager
Sep 26 20:22:52 UTC 2023	released	job awaits launch by Slurm scheduler
Sep 26 20:25:43 UTC 2023	running	job `7582` is running
Sep 26 23:04:26 UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-7582.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen3-1695769349.tar.gz` size: 117 MiB (123646736 bytes) entries: 9463 modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all `cairo/1.16.0-GCCcore-10.3.0.lua` `FLAC/1.3.3-GCCcore-10.3.0.lua` `FriBidi/1.0.10-GCCcore-10.3.0.lua` `Ghostscript/9.54.0-GCCcore-10.3.0.lua` `GLPK/5.0-GCCcore-10.3.0.lua` `GObject-Introspection/1.68.0-GCCcore-10.3.0.lua` `GSL/2.7-GCC-10.3.0.lua` `HarfBuzz/2.8.1-GCCcore-10.3.0.lua` `ImageMagick/7.0.11-14-GCCcore-10.3.0.lua` `libgit2/1.1.0-GCCcore-10.3.0.lua` `libogg/1.3.4-GCCcore-10.3.0.lua` `libsndfile/1.0.31-GCCcore-10.3.0.lua` `libvorbis/1.3.7-GCCcore-10.3.0.lua` `LittleCMS/2.12-GCCcore-10.3.0.lua` `nettle/3.7.2-GCCcore-10.3.0.lua` `NLopt/2.7.0-GCCcore-10.3.0.lua` `nodejs/14.17.0-GCCcore-10.3.0.lua` `Pango/1.48.5-GCCcore-10.3.0.lua` `pixman/0.40.0-GCCcore-10.3.0.lua` `Tk/8.6.11-GCCcore-10.3.0.lua` `UDUNITS/2.2.28-GCCcore-10.3.0.lua` `Xvfb/1.20.11-GCCcore-10.3.0.lua` software under 2023.06/software/linux/x86_64/amd/zen3/software `cairo/1.16.0-GCCcore-10.3.0` `FLAC/1.3.3-GCCcore-10.3.0` `FriBidi/1.0.10-GCCcore-10.3.0` `Ghostscript/9.54.0-GCCcore-10.3.0` `GLPK/5.0-GCCcore-10.3.0` `GObject-Introspection/1.68.0-GCCcore-10.3.0` `GSL/2.7-GCC-10.3.0` `HarfBuzz/2.8.1-GCCcore-10.3.0` `ImageMagick/7.0.11-14-GCCcore-10.3.0` `libgit2/1.1.0-GCCcore-10.3.0` `libogg/1.3.4-GCCcore-10.3.0` `libsndfile/1.0.31-GCCcore-10.3.0` `libvorbis/1.3.7-GCCcore-10.3.0` `LittleCMS/2.12-GCCcore-10.3.0` `nettle/3.7.2-GCCcore-10.3.0` `NLopt/2.7.0-GCCcore-10.3.0` `nodejs/14.17.0-GCCcore-10.3.0` `Pango/1.48.5-GCCcore-10.3.0` `pixman/0.40.0-GCCcore-10.3.0` `Tk/8.6.11-GCCcore-10.3.0` `UDUNITS/2.2.28-GCCcore-10.3.0` `Xvfb/1.20.11-GCCcore-10.3.0` other under 2023.06/software/linux/x86_64/amd/zen3 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

eessi-bot-aws · 2023-09-26T20:22:41Z

New job on instance eessi-bot-citc-aws for architecture aarch64-generic for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.09/pr_328/7583

date	job status	comment
Sep 26 20:22:41 UTC 2023	submitted	job id `7583` awaits release by job manager
Sep 26 20:22:50 UTC 2023	released	job awaits launch by Slurm scheduler
Sep 26 20:25:40 UTC 2023	running	job `7583` is running
Sep 27 02:03:02 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7583.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1695779986.tar.gz` size: 1377 MiB (1444818758 bytes) entries: 72190 modules under 2023.06/software/linux/aarch64/generic/modules/all `cairo/1.16.0-GCCcore-10.3.0.lua` `FLAC/1.3.3-GCCcore-10.3.0.lua` `FriBidi/1.0.10-GCCcore-10.3.0.lua` `Ghostscript/9.54.0-GCCcore-10.3.0.lua` `GLPK/5.0-GCCcore-10.3.0.lua` `GObject-Introspection/1.68.0-GCCcore-10.3.0.lua` `GSL/2.7-GCC-10.3.0.lua` `HarfBuzz/2.8.1-GCCcore-10.3.0.lua` `ImageMagick/7.0.11-14-GCCcore-10.3.0.lua` `libgit2/1.1.0-GCCcore-10.3.0.lua` `libogg/1.3.4-GCCcore-10.3.0.lua` `libsndfile/1.0.31-GCCcore-10.3.0.lua` `libvorbis/1.3.7-GCCcore-10.3.0.lua` `LittleCMS/2.12-GCCcore-10.3.0.lua` `nettle/3.7.2-GCCcore-10.3.0.lua` `NLopt/2.7.0-GCCcore-10.3.0.lua` `nodejs/14.17.0-GCCcore-10.3.0.lua` `Pango/1.48.5-GCCcore-10.3.0.lua` `pixman/0.40.0-GCCcore-10.3.0.lua` `R/4.1.0-foss-2021a.lua` `Tk/8.6.11-GCCcore-10.3.0.lua` `UDUNITS/2.2.28-GCCcore-10.3.0.lua` `Xvfb/1.20.11-GCCcore-10.3.0.lua` software under 2023.06/software/linux/aarch64/generic/software `cairo/1.16.0-GCCcore-10.3.0` `FLAC/1.3.3-GCCcore-10.3.0` `FriBidi/1.0.10-GCCcore-10.3.0` `Ghostscript/9.54.0-GCCcore-10.3.0` `GLPK/5.0-GCCcore-10.3.0` `GObject-Introspection/1.68.0-GCCcore-10.3.0` `GSL/2.7-GCC-10.3.0` `HarfBuzz/2.8.1-GCCcore-10.3.0` `ImageMagick/7.0.11-14-GCCcore-10.3.0` `libgit2/1.1.0-GCCcore-10.3.0` `libogg/1.3.4-GCCcore-10.3.0` `libsndfile/1.0.31-GCCcore-10.3.0` `libvorbis/1.3.7-GCCcore-10.3.0` `LittleCMS/2.12-GCCcore-10.3.0` `nettle/3.7.2-GCCcore-10.3.0` `NLopt/2.7.0-GCCcore-10.3.0` `nodejs/14.17.0-GCCcore-10.3.0` `Pango/1.48.5-GCCcore-10.3.0` `pixman/0.40.0-GCCcore-10.3.0` `R/4.1.0-foss-2021a` `Tk/8.6.11-GCCcore-10.3.0` `UDUNITS/2.2.28-GCCcore-10.3.0` `Xvfb/1.20.11-GCCcore-10.3.0` other under 2023.06/software/linux/aarch64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Sep 29 07:36:59 UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-generic-1695779986.tar.gz` to S3 bucket succeeded

eessi-bot-aws · 2023-09-26T20:22:48Z

New job on instance eessi-bot-citc-aws for architecture aarch64-neoverse_n1 for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.09/pr_328/7584

date	job status	comment
Sep 26 20:22:47 UTC 2023	submitted	job id `7584` awaits release by job manager
Sep 26 20:24:31 UTC 2023	released	job awaits launch by Slurm scheduler
Sep 26 20:27:40 UTC 2023	running	job `7584` is running
Sep 27 02:03:03 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7584.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_n1-1695780002.tar.gz` size: 1378 MiB (1445123203 bytes) entries: 72190 modules under 2023.06/software/linux/aarch64/neoverse_n1/modules/all `cairo/1.16.0-GCCcore-10.3.0.lua` `FLAC/1.3.3-GCCcore-10.3.0.lua` `FriBidi/1.0.10-GCCcore-10.3.0.lua` `Ghostscript/9.54.0-GCCcore-10.3.0.lua` `GLPK/5.0-GCCcore-10.3.0.lua` `GObject-Introspection/1.68.0-GCCcore-10.3.0.lua` `GSL/2.7-GCC-10.3.0.lua` `HarfBuzz/2.8.1-GCCcore-10.3.0.lua` `ImageMagick/7.0.11-14-GCCcore-10.3.0.lua` `libgit2/1.1.0-GCCcore-10.3.0.lua` `libogg/1.3.4-GCCcore-10.3.0.lua` `libsndfile/1.0.31-GCCcore-10.3.0.lua` `libvorbis/1.3.7-GCCcore-10.3.0.lua` `LittleCMS/2.12-GCCcore-10.3.0.lua` `nettle/3.7.2-GCCcore-10.3.0.lua` `NLopt/2.7.0-GCCcore-10.3.0.lua` `nodejs/14.17.0-GCCcore-10.3.0.lua` `Pango/1.48.5-GCCcore-10.3.0.lua` `pixman/0.40.0-GCCcore-10.3.0.lua` `R/4.1.0-foss-2021a.lua` `Tk/8.6.11-GCCcore-10.3.0.lua` `UDUNITS/2.2.28-GCCcore-10.3.0.lua` `Xvfb/1.20.11-GCCcore-10.3.0.lua` software under 2023.06/software/linux/aarch64/neoverse_n1/software `cairo/1.16.0-GCCcore-10.3.0` `FLAC/1.3.3-GCCcore-10.3.0` `FriBidi/1.0.10-GCCcore-10.3.0` `Ghostscript/9.54.0-GCCcore-10.3.0` `GLPK/5.0-GCCcore-10.3.0` `GObject-Introspection/1.68.0-GCCcore-10.3.0` `GSL/2.7-GCC-10.3.0` `HarfBuzz/2.8.1-GCCcore-10.3.0` `ImageMagick/7.0.11-14-GCCcore-10.3.0` `libgit2/1.1.0-GCCcore-10.3.0` `libogg/1.3.4-GCCcore-10.3.0` `libsndfile/1.0.31-GCCcore-10.3.0` `libvorbis/1.3.7-GCCcore-10.3.0` `LittleCMS/2.12-GCCcore-10.3.0` `nettle/3.7.2-GCCcore-10.3.0` `NLopt/2.7.0-GCCcore-10.3.0` `nodejs/14.17.0-GCCcore-10.3.0` `Pango/1.48.5-GCCcore-10.3.0` `pixman/0.40.0-GCCcore-10.3.0` `R/4.1.0-foss-2021a` `Tk/8.6.11-GCCcore-10.3.0` `UDUNITS/2.2.28-GCCcore-10.3.0` `Xvfb/1.20.11-GCCcore-10.3.0` other under 2023.06/software/linux/aarch64/neoverse_n1 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Sep 29 07:33:41 UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-neoverse_n1-1695780002.tar.gz` to S3 bucket succeeded

boegel · 2023-09-28T10:47:46Z

job 7574 (x86_64-generic): Failed to get data for PR #18761
job 7578 (x86_64-intel-skylake_avx512) + job 7582 (x86_64-amd-zen3) + job 7570 (aarch64-neoverse_v1): vague error when installing credentials, worth trying again

Error: package or namespace load failed for credentials:
 .onLoad failed in loadNamespace() for 'credentials', details:
  call: NULL
  error: Program 'git' terminated (timeout reached: 10.00sec)
Error: loading failed
Execution halted
ERROR: loading failed

So, trying again for the 4 failed targets...

boegel · 2023-09-28T10:49:17Z

bot: build repo:eessi-2023.06-software arch:x86_64/generic
bot: build repo:eessi-2023.06-software arch:x86_64/intel/skylake_avx512
bot: build repo:eessi-2023.06-software arch:x86_64/amd/zen3
bot: build repo:eessi-2023.06-software arch:aarch64/neoverse_v1

eessi-bot-aws · 2023-09-28T10:49:19Z

Updates by the bot instance eessi-bot-citc-aws (click for details)

received bot command build repo:eessi-2023.06-software arch:x86_64/generic from boegel
- expanded format: build repository:eessi-2023.06-software architecture:x86_64/generic
received bot command build repo:eessi-2023.06-software arch:x86_64/intel/skylake_avx512 from boegel
- expanded format: build repository:eessi-2023.06-software architecture:x86_64/intel/skylake_avx512
received bot command build repo:eessi-2023.06-software arch:x86_64/amd/zen3 from boegel
- expanded format: build repository:eessi-2023.06-software architecture:x86_64/amd/zen3
received bot command build repo:eessi-2023.06-software arch:aarch64/neoverse_v1 from boegel
- expanded format: build repository:eessi-2023.06-software architecture:aarch64/neoverse_v1
handling command build repository:eessi-2023.06-software architecture:x86_64/generic resulted in:
- submitted job 7591, for details & status see {2023.06}[foss/2021a] R v4.1.0 #328 (comment)
handling command build repository:eessi-2023.06-software architecture:x86_64/intel/skylake_avx512 resulted in:
- submitted job 7592, for details & status see {2023.06}[foss/2021a] R v4.1.0 #328 (comment)
handling command build repository:eessi-2023.06-software architecture:x86_64/amd/zen3 resulted in:
- submitted job 7593, for details & status see {2023.06}[foss/2021a] R v4.1.0 #328 (comment)
handling command build repository:eessi-2023.06-software architecture:aarch64/neoverse_v1 resulted in:
- submitted job 7594, for details & status see {2023.06}[foss/2021a] R v4.1.0 #328 (comment)

eessi-bot-aws · 2023-09-28T10:49:25Z

New job on instance eessi-bot-citc-aws for architecture x86_64-generic for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.09/pr_328/7591

date	job status	comment
Sep 28 10:49:25 UTC 2023	submitted	job id `7591` awaits release by job manager
Sep 28 10:50:30 UTC 2023	released	job awaits launch by Slurm scheduler
Sep 28 10:54:46 UTC 2023	running	job `7591` is running
Sep 28 17:50:08 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7591.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1695923233.tar.gz` size: 1383 MiB (1451223330 bytes) entries: 72190 modules under 2023.06/software/linux/x86_64/generic/modules/all `cairo/1.16.0-GCCcore-10.3.0.lua` `FLAC/1.3.3-GCCcore-10.3.0.lua` `FriBidi/1.0.10-GCCcore-10.3.0.lua` `Ghostscript/9.54.0-GCCcore-10.3.0.lua` `GLPK/5.0-GCCcore-10.3.0.lua` `GObject-Introspection/1.68.0-GCCcore-10.3.0.lua` `GSL/2.7-GCC-10.3.0.lua` `HarfBuzz/2.8.1-GCCcore-10.3.0.lua` `ImageMagick/7.0.11-14-GCCcore-10.3.0.lua` `libgit2/1.1.0-GCCcore-10.3.0.lua` `libogg/1.3.4-GCCcore-10.3.0.lua` `libsndfile/1.0.31-GCCcore-10.3.0.lua` `libvorbis/1.3.7-GCCcore-10.3.0.lua` `LittleCMS/2.12-GCCcore-10.3.0.lua` `nettle/3.7.2-GCCcore-10.3.0.lua` `NLopt/2.7.0-GCCcore-10.3.0.lua` `nodejs/14.17.0-GCCcore-10.3.0.lua` `Pango/1.48.5-GCCcore-10.3.0.lua` `pixman/0.40.0-GCCcore-10.3.0.lua` `R/4.1.0-foss-2021a.lua` `Tk/8.6.11-GCCcore-10.3.0.lua` `UDUNITS/2.2.28-GCCcore-10.3.0.lua` `Xvfb/1.20.11-GCCcore-10.3.0.lua` software under 2023.06/software/linux/x86_64/generic/software `cairo/1.16.0-GCCcore-10.3.0` `FLAC/1.3.3-GCCcore-10.3.0` `FriBidi/1.0.10-GCCcore-10.3.0` `Ghostscript/9.54.0-GCCcore-10.3.0` `GLPK/5.0-GCCcore-10.3.0` `GObject-Introspection/1.68.0-GCCcore-10.3.0` `GSL/2.7-GCC-10.3.0` `HarfBuzz/2.8.1-GCCcore-10.3.0` `ImageMagick/7.0.11-14-GCCcore-10.3.0` `libgit2/1.1.0-GCCcore-10.3.0` `libogg/1.3.4-GCCcore-10.3.0` `libsndfile/1.0.31-GCCcore-10.3.0` `libvorbis/1.3.7-GCCcore-10.3.0` `LittleCMS/2.12-GCCcore-10.3.0` `nettle/3.7.2-GCCcore-10.3.0` `NLopt/2.7.0-GCCcore-10.3.0` `nodejs/14.17.0-GCCcore-10.3.0` `Pango/1.48.5-GCCcore-10.3.0` `pixman/0.40.0-GCCcore-10.3.0` `R/4.1.0-foss-2021a` `Tk/8.6.11-GCCcore-10.3.0` `UDUNITS/2.2.28-GCCcore-10.3.0` `Xvfb/1.20.11-GCCcore-10.3.0` other under 2023.06/software/linux/x86_64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Sep 29 07:34:20 UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-generic-1695923233.tar.gz` to S3 bucket succeeded

eessi-bot-aws · 2023-09-28T10:49:32Z

New job on instance eessi-bot-citc-aws for architecture x86_64-intel-skylake_avx512 for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.09/pr_328/7592

date	job status	comment
Sep 28 10:49:31 UTC 2023	submitted	job id `7592` awaits release by job manager
Sep 28 10:50:27 UTC 2023	released	job awaits launch by Slurm scheduler
Sep 28 10:54:44 UTC 2023	running	job `7592` is running
Sep 28 16:32:14 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7592.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1695918597.tar.gz` size: 1387 MiB (1454534452 bytes) entries: 72190 modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all `cairo/1.16.0-GCCcore-10.3.0.lua` `FLAC/1.3.3-GCCcore-10.3.0.lua` `FriBidi/1.0.10-GCCcore-10.3.0.lua` `Ghostscript/9.54.0-GCCcore-10.3.0.lua` `GLPK/5.0-GCCcore-10.3.0.lua` `GObject-Introspection/1.68.0-GCCcore-10.3.0.lua` `GSL/2.7-GCC-10.3.0.lua` `HarfBuzz/2.8.1-GCCcore-10.3.0.lua` `ImageMagick/7.0.11-14-GCCcore-10.3.0.lua` `libgit2/1.1.0-GCCcore-10.3.0.lua` `libogg/1.3.4-GCCcore-10.3.0.lua` `libsndfile/1.0.31-GCCcore-10.3.0.lua` `libvorbis/1.3.7-GCCcore-10.3.0.lua` `LittleCMS/2.12-GCCcore-10.3.0.lua` `nettle/3.7.2-GCCcore-10.3.0.lua` `NLopt/2.7.0-GCCcore-10.3.0.lua` `nodejs/14.17.0-GCCcore-10.3.0.lua` `Pango/1.48.5-GCCcore-10.3.0.lua` `pixman/0.40.0-GCCcore-10.3.0.lua` `R/4.1.0-foss-2021a.lua` `Tk/8.6.11-GCCcore-10.3.0.lua` `UDUNITS/2.2.28-GCCcore-10.3.0.lua` `Xvfb/1.20.11-GCCcore-10.3.0.lua` software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software `cairo/1.16.0-GCCcore-10.3.0` `FLAC/1.3.3-GCCcore-10.3.0` `FriBidi/1.0.10-GCCcore-10.3.0` `Ghostscript/9.54.0-GCCcore-10.3.0` `GLPK/5.0-GCCcore-10.3.0` `GObject-Introspection/1.68.0-GCCcore-10.3.0` `GSL/2.7-GCC-10.3.0` `HarfBuzz/2.8.1-GCCcore-10.3.0` `ImageMagick/7.0.11-14-GCCcore-10.3.0` `libgit2/1.1.0-GCCcore-10.3.0` `libogg/1.3.4-GCCcore-10.3.0` `libsndfile/1.0.31-GCCcore-10.3.0` `libvorbis/1.3.7-GCCcore-10.3.0` `LittleCMS/2.12-GCCcore-10.3.0` `nettle/3.7.2-GCCcore-10.3.0` `NLopt/2.7.0-GCCcore-10.3.0` `nodejs/14.17.0-GCCcore-10.3.0` `Pango/1.48.5-GCCcore-10.3.0` `pixman/0.40.0-GCCcore-10.3.0` `R/4.1.0-foss-2021a` `Tk/8.6.11-GCCcore-10.3.0` `UDUNITS/2.2.28-GCCcore-10.3.0` `Xvfb/1.20.11-GCCcore-10.3.0` other under 2023.06/software/linux/x86_64/intel/skylake_avx512 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Sep 29 07:36:18 UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1695918597.tar.gz` to S3 bucket succeeded

eessi-bot-aws · 2023-09-28T10:49:38Z

New job on instance eessi-bot-citc-aws for architecture x86_64-amd-zen3 for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.09/pr_328/7593

date	job status	comment
Sep 28 10:49:37 UTC 2023	submitted	job id `7593` awaits release by job manager
Sep 28 10:50:25 UTC 2023	released	job awaits launch by Slurm scheduler
Sep 28 10:54:41 UTC 2023	running	job `7593` is running
Sep 28 15:23:10 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7593.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen3-1695914401.tar.gz` size: 1386 MiB (1453596443 bytes) entries: 72190 modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all `cairo/1.16.0-GCCcore-10.3.0.lua` `FLAC/1.3.3-GCCcore-10.3.0.lua` `FriBidi/1.0.10-GCCcore-10.3.0.lua` `Ghostscript/9.54.0-GCCcore-10.3.0.lua` `GLPK/5.0-GCCcore-10.3.0.lua` `GObject-Introspection/1.68.0-GCCcore-10.3.0.lua` `GSL/2.7-GCC-10.3.0.lua` `HarfBuzz/2.8.1-GCCcore-10.3.0.lua` `ImageMagick/7.0.11-14-GCCcore-10.3.0.lua` `libgit2/1.1.0-GCCcore-10.3.0.lua` `libogg/1.3.4-GCCcore-10.3.0.lua` `libsndfile/1.0.31-GCCcore-10.3.0.lua` `libvorbis/1.3.7-GCCcore-10.3.0.lua` `LittleCMS/2.12-GCCcore-10.3.0.lua` `nettle/3.7.2-GCCcore-10.3.0.lua` `NLopt/2.7.0-GCCcore-10.3.0.lua` `nodejs/14.17.0-GCCcore-10.3.0.lua` `Pango/1.48.5-GCCcore-10.3.0.lua` `pixman/0.40.0-GCCcore-10.3.0.lua` `R/4.1.0-foss-2021a.lua` `Tk/8.6.11-GCCcore-10.3.0.lua` `UDUNITS/2.2.28-GCCcore-10.3.0.lua` `Xvfb/1.20.11-GCCcore-10.3.0.lua` software under 2023.06/software/linux/x86_64/amd/zen3/software `cairo/1.16.0-GCCcore-10.3.0` `FLAC/1.3.3-GCCcore-10.3.0` `FriBidi/1.0.10-GCCcore-10.3.0` `Ghostscript/9.54.0-GCCcore-10.3.0` `GLPK/5.0-GCCcore-10.3.0` `GObject-Introspection/1.68.0-GCCcore-10.3.0` `GSL/2.7-GCC-10.3.0` `HarfBuzz/2.8.1-GCCcore-10.3.0` `ImageMagick/7.0.11-14-GCCcore-10.3.0` `libgit2/1.1.0-GCCcore-10.3.0` `libogg/1.3.4-GCCcore-10.3.0` `libsndfile/1.0.31-GCCcore-10.3.0` `libvorbis/1.3.7-GCCcore-10.3.0` `LittleCMS/2.12-GCCcore-10.3.0` `nettle/3.7.2-GCCcore-10.3.0` `NLopt/2.7.0-GCCcore-10.3.0` `nodejs/14.17.0-GCCcore-10.3.0` `Pango/1.48.5-GCCcore-10.3.0` `pixman/0.40.0-GCCcore-10.3.0` `R/4.1.0-foss-2021a` `Tk/8.6.11-GCCcore-10.3.0` `UDUNITS/2.2.28-GCCcore-10.3.0` `Xvfb/1.20.11-GCCcore-10.3.0` other under 2023.06/software/linux/x86_64/amd/zen3 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Sep 29 07:32:20 UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-amd-zen3-1695914401.tar.gz` to S3 bucket succeeded

eessi-bot-aws · 2023-09-28T10:49:44Z

New job on instance eessi-bot-citc-aws for architecture aarch64-neoverse_v1 for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.09/pr_328/7594

date	job status	comment
Sep 28 10:49:43 UTC 2023	submitted	job id `7594` awaits release by job manager
Sep 28 10:50:22 UTC 2023	released	job awaits launch by Slurm scheduler
Sep 28 10:54:38 UTC 2023	running	job `7594` is running
Sep 28 15:22:01 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7594.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_v1-1695914330.tar.gz` size: 1378 MiB (1445712758 bytes) entries: 72190 modules under 2023.06/software/linux/aarch64/neoverse_v1/modules/all `cairo/1.16.0-GCCcore-10.3.0.lua` `FLAC/1.3.3-GCCcore-10.3.0.lua` `FriBidi/1.0.10-GCCcore-10.3.0.lua` `Ghostscript/9.54.0-GCCcore-10.3.0.lua` `GLPK/5.0-GCCcore-10.3.0.lua` `GObject-Introspection/1.68.0-GCCcore-10.3.0.lua` `GSL/2.7-GCC-10.3.0.lua` `HarfBuzz/2.8.1-GCCcore-10.3.0.lua` `ImageMagick/7.0.11-14-GCCcore-10.3.0.lua` `libgit2/1.1.0-GCCcore-10.3.0.lua` `libogg/1.3.4-GCCcore-10.3.0.lua` `libsndfile/1.0.31-GCCcore-10.3.0.lua` `libvorbis/1.3.7-GCCcore-10.3.0.lua` `LittleCMS/2.12-GCCcore-10.3.0.lua` `nettle/3.7.2-GCCcore-10.3.0.lua` `NLopt/2.7.0-GCCcore-10.3.0.lua` `nodejs/14.17.0-GCCcore-10.3.0.lua` `Pango/1.48.5-GCCcore-10.3.0.lua` `pixman/0.40.0-GCCcore-10.3.0.lua` `R/4.1.0-foss-2021a.lua` `Tk/8.6.11-GCCcore-10.3.0.lua` `UDUNITS/2.2.28-GCCcore-10.3.0.lua` `Xvfb/1.20.11-GCCcore-10.3.0.lua` software under 2023.06/software/linux/aarch64/neoverse_v1/software `cairo/1.16.0-GCCcore-10.3.0` `FLAC/1.3.3-GCCcore-10.3.0` `FriBidi/1.0.10-GCCcore-10.3.0` `Ghostscript/9.54.0-GCCcore-10.3.0` `GLPK/5.0-GCCcore-10.3.0` `GObject-Introspection/1.68.0-GCCcore-10.3.0` `GSL/2.7-GCC-10.3.0` `HarfBuzz/2.8.1-GCCcore-10.3.0` `ImageMagick/7.0.11-14-GCCcore-10.3.0` `libgit2/1.1.0-GCCcore-10.3.0` `libogg/1.3.4-GCCcore-10.3.0` `libsndfile/1.0.31-GCCcore-10.3.0` `libvorbis/1.3.7-GCCcore-10.3.0` `LittleCMS/2.12-GCCcore-10.3.0` `nettle/3.7.2-GCCcore-10.3.0` `NLopt/2.7.0-GCCcore-10.3.0` `nodejs/14.17.0-GCCcore-10.3.0` `Pango/1.48.5-GCCcore-10.3.0` `pixman/0.40.0-GCCcore-10.3.0` `R/4.1.0-foss-2021a` `Tk/8.6.11-GCCcore-10.3.0` `UDUNITS/2.2.28-GCCcore-10.3.0` `Xvfb/1.20.11-GCCcore-10.3.0` other under 2023.06/software/linux/aarch64/neoverse_v1 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Sep 29 07:33:00 UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-neoverse_v1-1695914330.tar.gz` to S3 bucket succeeded

{2023.06}[foss/2022b] R v4.2.2

boegel added the pilot-2023.06 label Sep 7, 2023

{2023.06}[foss/2021a] R v4.1.0

401a35f

boegel force-pushed the 2023.06_2021a_R-4.1.0 branch from 6317341 to 401a35f Compare September 7, 2023 11:34

boegel mentioned this pull request Sep 7, 2023

{2023.06}[foss/2021a] RStudio-Server V1.4.1717-Java-11-R V4.1.0 #299

Closed

use PR to fix xvfb-run permission issue for Xvfb 1.20.11

2bc2d2f

fix failing build for testthat R extension on top of recent glibc via…

f3a1f35

… pre_single_extension hook that replaces SIGSTKSZ with constant value

boegel force-pushed the 2023.06_2021a_R-4.1.0 branch from a38a5a3 to f3a1f35 Compare September 21, 2023 10:07

EESSI deleted a comment from eessi-bot-aws bot Sep 21, 2023

Merge branch '2023.06' into 2023.06_2021a_R-4.1.0

90a8048

EESSI deleted a comment from eessi-bot-aws bot Sep 28, 2023

boegel added the ready-to-deploy Mark a PR as ready to deploy label Sep 28, 2023

bedroge added bot:deploy Ask bot to deploy missing software installations to EESSI and removed ready-to-deploy Mark a PR as ready to deploy labels Sep 29, 2023

bedroge mentioned this pull request Sep 29, 2023

Control center in PR description EESSI/eessi-bot-software-layer#96

Open

bedroge approved these changes Sep 29, 2023

View reviewed changes

bedroge merged commit ee1e6b0 into EESSI:2023.06 Sep 29, 2023
121 checks passed

boegel deleted the 2023.06_2021a_R-4.1.0 branch September 29, 2023 13:13

trz42 pushed a commit to trz42/software-layer that referenced this pull request Apr 16, 2024

Merge pull request EESSI#328 from trz42/nessi-2023.06-R-422-2022b

909a14d

{2023.06}[foss/2022b] R v4.2.2

{2023.06}[foss/2021a] R v4.1.0 #328

{2023.06}[foss/2021a] R v4.1.0 #328

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