{2023.06}[foss/2023a] OpenFOAM v10 #404

Neves-P · 2023-11-29T09:40:43Z

First install:

10 out of 113 required modules missing:

* METIS/5.1.0-GCCcore-12.3.0 (METIS-5.1.0-GCCcore-12.3.0.eb)
* CGAL/5.6-GCCcore-12.3.0 (CGAL-5.6-GCCcore-12.3.0.eb)
* libgd/2.3.3-GCCcore-12.3.0 (libgd-2.3.3-GCCcore-12.3.0.eb)
* libcerf/2.3-GCCcore-12.3.0 (libcerf-2.3-GCCcore-12.3.0.eb)
* Lua/5.4.6-GCCcore-12.3.0 (Lua-5.4.6-GCCcore-12.3.0.eb)
* SCOTCH/7.0.3-gompi-2023a (SCOTCH-7.0.3-gompi-2023a.eb)
* Pango/1.50.14-GCCcore-12.3.0 (Pango-1.50.14-GCCcore-12.3.0.eb)
* ParaView/5.11.2-foss-2023a (ParaView-5.11.2-foss-2023a.eb)
* gnuplot/5.4.8-GCCcore-12.3.0 (gnuplot-5.4.8-GCCcore-12.3.0.eb)
* OpenFOAM/10-foss-2023a (OpenFOAM-10-foss-2023a.eb)

eessi-bot-aws · 2023-11-29T09:40:47Z

Instance eessi-bot-mc-aws is configured to build:

arch x86_64/generic for repo eessi-hpc.org-2023.06-compat
arch x86_64/generic for repo eessi-hpc.org-2023.06-software
arch x86_64/generic for repo eessi.io-2023.06-compat
arch x86_64/generic for repo eessi.io-2023.06-software
arch x86_64/intel/haswell for repo eessi-hpc.org-2023.06-compat
arch x86_64/intel/haswell for repo eessi-hpc.org-2023.06-software
arch x86_64/intel/haswell for repo eessi.io-2023.06-compat
arch x86_64/intel/haswell for repo eessi.io-2023.06-software
arch x86_64/intel/skylake_avx512 for repo eessi-hpc.org-2023.06-compat
arch x86_64/intel/skylake_avx512 for repo eessi-hpc.org-2023.06-software
arch x86_64/intel/skylake_avx512 for repo eessi.io-2023.06-compat
arch x86_64/intel/skylake_avx512 for repo eessi.io-2023.06-software
arch x86_64/amd/zen2 for repo eessi-hpc.org-2023.06-compat
arch x86_64/amd/zen2 for repo eessi-hpc.org-2023.06-software
arch x86_64/amd/zen2 for repo eessi.io-2023.06-compat
arch x86_64/amd/zen2 for repo eessi.io-2023.06-software
arch x86_64/amd/zen3 for repo eessi-hpc.org-2023.06-compat
arch x86_64/amd/zen3 for repo eessi-hpc.org-2023.06-software
arch x86_64/amd/zen3 for repo eessi.io-2023.06-compat
arch x86_64/amd/zen3 for repo eessi.io-2023.06-software
arch aarch64/generic for repo eessi-hpc.org-2023.06-compat
arch aarch64/generic for repo eessi-hpc.org-2023.06-software
arch aarch64/generic for repo eessi.io-2023.06-compat
arch aarch64/generic for repo eessi.io-2023.06-software
arch aarch64/neoverse_n1 for repo eessi-hpc.org-2023.06-compat
arch aarch64/neoverse_n1 for repo eessi-hpc.org-2023.06-software
arch aarch64/neoverse_n1 for repo eessi.io-2023.06-compat
arch aarch64/neoverse_n1 for repo eessi.io-2023.06-software
arch aarch64/neoverse_v1 for repo eessi-hpc.org-2023.06-compat
arch aarch64/neoverse_v1 for repo eessi-hpc.org-2023.06-software
arch aarch64/neoverse_v1 for repo eessi.io-2023.06-compat
arch aarch64/neoverse_v1 for repo eessi.io-2023.06-software

Neves-P · 2023-11-29T09:44:47Z

bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3
bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1

eessi-bot-aws · 2023-11-29T09:44:50Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from Neves-P
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3
received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from Neves-P
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:
- submitted job 1492, for details & status see {2023.06}[foss/2023a] OpenFOAM v10 #404 (comment)
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:
- submitted job 1493, for details & status see {2023.06}[foss/2023a] OpenFOAM v10 #404 (comment)

eessi-bot-aws · 2023-11-29T09:44:55Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.11/pr_404/1492

date	job status	comment
Nov 29 09:44:54 UTC 2023	submitted	job id `1492` awaits release by job manager
Nov 29 09:45:07 UTC 2023	released	job awaits launch by Slurm scheduler
Nov 29 09:51:19 UTC 2023	running	job `1492` is running
Nov 29 10:00:45 UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-1492.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen3-1701251964.tar.gz` size: 27 MiB (28837078 bytes) entries: 5110 modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all `Bison/3.8.2-GCCcore-12.3.0.lua` `Brotli/1.0.9-GCCcore-12.3.0.lua` `CGAL/5.6-GCCcore-12.3.0.lua` `Doxygen/1.9.7-GCCcore-12.3.0.lua` `fontconfig/2.14.2-GCCcore-12.3.0.lua` `freetype/2.13.0-GCCcore-12.3.0.lua` `gzip/1.12-GCCcore-12.3.0.lua` `libiconv/1.17-GCCcore-12.3.0.lua` `lz4/1.9.4-GCCcore-12.3.0.lua` `METIS/5.1.0-GCCcore-12.3.0.lua` `pixman/0.42.2-GCCcore-12.3.0.lua` `SCOTCH/7.0.3-gompi-2023a.lua` `zstd/1.5.5-GCCcore-12.3.0.lua` software under 2023.06/software/linux/x86_64/amd/zen3/software `Bison/3.8.2-GCCcore-12.3.0` `Brotli/1.0.9-GCCcore-12.3.0` `CGAL/5.6-GCCcore-12.3.0` `Doxygen/1.9.7-GCCcore-12.3.0` `fontconfig/2.14.2-GCCcore-12.3.0` `freetype/2.13.0-GCCcore-12.3.0` `gzip/1.12-GCCcore-12.3.0` `libiconv/1.17-GCCcore-12.3.0` `lz4/1.9.4-GCCcore-12.3.0` `METIS/5.1.0-GCCcore-12.3.0` `pixman/0.42.2-GCCcore-12.3.0` `SCOTCH/7.0.3-gompi-2023a` `zstd/1.5.5-GCCcore-12.3.0` other under 2023.06/software/linux/x86_64/amd/zen3 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Nov 29 10:00:45 UTC 2023	test result	(no tests yet)

eessi-bot-aws · 2023-11-29T09:44:59Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_v1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.11/pr_404/1493

date	job status	comment
Nov 29 09:44:58 UTC 2023	submitted	job id `1493` awaits release by job manager
Nov 29 09:45:05 UTC 2023	released	job awaits launch by Slurm scheduler
Nov 29 09:50:15 UTC 2023	running	job `1493` is running
Nov 29 10:57:35 UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-1493.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_v1-1701255407.tar.gz` size: 60 MiB (63362940 bytes) entries: 22701 modules under 2023.06/software/linux/aarch64/neoverse_v1/modules/all `Bison/3.8.2-GCCcore-12.3.0.lua` `Boost/1.82.0-GCC-12.3.0.lua` `Brotli/1.0.9-GCCcore-12.3.0.lua` `CGAL/5.6-GCCcore-12.3.0.lua` `Doxygen/1.9.7-GCCcore-12.3.0.lua` `fontconfig/2.14.2-GCCcore-12.3.0.lua` `freetype/2.13.0-GCCcore-12.3.0.lua` `gzip/1.12-GCCcore-12.3.0.lua` `libiconv/1.17-GCCcore-12.3.0.lua` `lz4/1.9.4-GCCcore-12.3.0.lua` `METIS/5.1.0-GCCcore-12.3.0.lua` `pixman/0.42.2-GCCcore-12.3.0.lua` `SCOTCH/7.0.3-gompi-2023a.lua` `zstd/1.5.5-GCCcore-12.3.0.lua` software under 2023.06/software/linux/aarch64/neoverse_v1/software `Bison/3.8.2-GCCcore-12.3.0` `Boost/1.82.0-GCC-12.3.0` `Brotli/1.0.9-GCCcore-12.3.0` `CGAL/5.6-GCCcore-12.3.0` `Doxygen/1.9.7-GCCcore-12.3.0` `fontconfig/2.14.2-GCCcore-12.3.0` `freetype/2.13.0-GCCcore-12.3.0` `gzip/1.12-GCCcore-12.3.0` `libiconv/1.17-GCCcore-12.3.0` `lz4/1.9.4-GCCcore-12.3.0` `METIS/5.1.0-GCCcore-12.3.0` `pixman/0.42.2-GCCcore-12.3.0` `SCOTCH/7.0.3-gompi-2023a` `zstd/1.5.5-GCCcore-12.3.0` other under 2023.06/software/linux/aarch64/neoverse_v1 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Nov 29 10:57:35 UTC 2023	test result	(no tests yet)

easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.8.2-2023a.yml

Neves-P · 2023-11-29T10:22:48Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.11/pr_404/1492
date job status comment
Nov 29 09:44:54 UTC 2023 submitted job id 1492 awaits release by job manager
Nov 29 09:45:07 UTC 2023 released job awaits launch by Slurm scheduler
Nov 29 09:51:19 UTC 2023 running job 1492 is running
Nov 29 10:00:45 UTC 2023 finished
😢 FAILURE (click triangle for details)
Nov 29 10:00:45 UTC 2023 test result (no tests yet)

Fails here:

== 2023-11-29 09:59:00,508 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/tools/build_log.py:111 in caller_info): Checksum verification for /project/def-users/bot/shared/easybuild/sources/b/Boost/boost_1_82_0.tar.gz using 66a469b6e608a51f8347236f4912e27dc5c60c60d7d53ae9bfe4683316c6f04c failed. (at easybuild/framework/easyblock.py:2457 in checksum_step)

boegel · 2023-11-29T11:23:54Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.11/pr_404/1492
date job status comment
Nov 29 09:44:54 UTC 2023 submitted job id 1492 awaits release by job manager
Nov 29 09:45:07 UTC 2023 released job awaits launch by Slurm scheduler
Nov 29 09:51:19 UTC 2023 running job 1492 is running
Nov 29 10:00:45 UTC 2023 finished
😢 FAILURE (click triangle for details)
Nov 29 10:00:45 UTC 2023 test result (no tests yet)

Fails here:
== 2023-11-29 09:59:00,508 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/tools/build_log.py:111 in caller_info): Checksum verification for /project/def-users/bot/shared/easybuild/sources/b/Boost/boost_1_82_0.tar.gz using 66a469b6e608a51f8347236f4912e27dc5c60c60d7d53ae9bfe4683316c6f04c failed. (at easybuild/framework/easyblock.py:2457 in checksum_step)

These two builds were started at the same time, and they stepped on each other's toes when downloading Boost.
Current file on disk is correct:

[bot@login1 ~]$ sha256sum /project/def-users/bot/shared/easybuild/sources/b/Boost/boost_1_82_0.tar.gz
66a469b6e608a51f8347236f4912e27dc5c60c60d7d53ae9bfe4683316c6f04c  /project/def-users/bot/shared/easybuild/sources/b/Boost/boost_1_82_0.tar.gz

So the zen3 caught partial download of the neoverse_v1 build.

The neoverse_v1 had a genuine failure in the netCDF tests though:

The following tests FAILED:
        163 - nc_test4_run_par_test (Timeout)
        190 - h5_test_run_par_tests (Timeout)
Errors while running CTest
make: *** [Makefile:94: test] Error 8

Neves-P · 2023-11-29T14:23:54Z

Thanks for the tips and logs!

As discussed, I marked this PR as a draft until we get #405 and #406 deployed and merged so we don't have to all the large dependencies all the time.

After that, since the issue is similar to easybuilders/easybuild-easyconfigs#15959 which was resolved by skipping the offending tests in easybuilders/easybuild-easyconfigs#17107 (comment), and since as you mentioned this is likely fuse-overlayfs slowing things, I'll try the same thing.

I've also opened an issue for this here: support portal #24.

Neves-P · 2023-12-01T09:56:18Z

bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3

eessi-bot-aws · 2023-12-01T09:56:21Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from Neves-P
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:
- submitted job 1609, for details & status see {2023.06}[foss/2023a] OpenFOAM v10 #404 (comment)

eessi-bot-aws · 2023-12-01T09:56:26Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_404/1609

date	job status	comment
Dec 01 09:56:25 UTC 2023	submitted	job id `1609` awaits release by job manager
Dec 01 09:57:22 UTC 2023	released	job awaits launch by Slurm scheduler
Dec 01 10:02:25 UTC 2023	running	job `1609` is running
Dec 01 10:24:49 UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-1609.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen3-1701426221.tar.gz` size: 50 MiB (52914940 bytes) entries: 22191 modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all `Boost/1.82.0-GCC-12.3.0.lua` `CGAL/5.6-GCCcore-12.3.0.lua` `ffnvcodec/12.0.16.0.lua` `FriBidi/1.0.12-GCCcore-12.3.0.lua` `libcerf/2.3-GCCcore-12.3.0.lua` `libgd/2.3.3-GCCcore-12.3.0.lua` `Lua/5.4.6-GCCcore-12.3.0.lua` `METIS/5.1.0-GCCcore-12.3.0.lua` `netCDF/4.9.2-gompi-2023a.lua` `Pango/1.50.14-GCCcore-12.3.0.lua` `SCOTCH/7.0.3-gompi-2023a.lua` `x264/20230226-GCCcore-12.3.0.lua` software under 2023.06/software/linux/x86_64/amd/zen3/software `Boost/1.82.0-GCC-12.3.0` `CGAL/5.6-GCCcore-12.3.0` `ffnvcodec/12.0.16.0` `FriBidi/1.0.12-GCCcore-12.3.0` `libcerf/2.3-GCCcore-12.3.0` `libgd/2.3.3-GCCcore-12.3.0` `Lua/5.4.6-GCCcore-12.3.0` `METIS/5.1.0-GCCcore-12.3.0` `netCDF/4.9.2-gompi-2023a` `Pango/1.50.14-GCCcore-12.3.0` `SCOTCH/7.0.3-gompi-2023a` `x264/20230226-GCCcore-12.3.0` other under 2023.06/software/linux/x86_64/amd/zen3 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Dec 01 10:24:49 UTC 2023	test result	(no tests yet)

bedroge · 2023-12-01T10:52:51Z

@Neves-P Looks like this is having the same issue with gnuplot as @boegel encountered here: #380 (comment). This was fixed in easybuilders/easybuild-easyconfigs#19261, so we need to add gnuplot explicitly here with from-pr.

Neves-P · 2023-12-01T11:09:37Z

bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3

eessi-bot-aws · 2023-12-01T11:09:40Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from Neves-P
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:
- submitted job 1619, for details & status see {2023.06}[foss/2023a] OpenFOAM v10 #404 (comment)

eessi-bot-aws · 2023-12-01T11:09:44Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_404/1619

date	job status	comment
Dec 01 11:09:43 UTC 2023	submitted	job id `1619` awaits release by job manager
Dec 01 11:10:18 UTC 2023	released	job awaits launch by Slurm scheduler
Dec 01 11:11:20 UTC 2023	running	job `1619` is running
Dec 01 13:06:48 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-1619.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen3-1701435867.tar.gz` size: 611 MiB (641645281 bytes) entries: 69701 modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all `Boost/1.82.0-GCC-12.3.0.lua` `CGAL/5.6-GCCcore-12.3.0.lua` `FFmpeg/6.0-GCCcore-12.3.0.lua` `ffnvcodec/12.0.16.0.lua` `FriBidi/1.0.12-GCCcore-12.3.0.lua` `gnuplot/5.4.8-GCCcore-12.3.0.lua` `LAME/3.100-GCCcore-12.3.0.lua` `libcerf/2.3-GCCcore-12.3.0.lua` `libgd/2.3.3-GCCcore-12.3.0.lua` `Lua/5.4.6-GCCcore-12.3.0.lua` `METIS/5.1.0-GCCcore-12.3.0.lua` `netCDF/4.9.2-gompi-2023a.lua` `OpenFOAM/10-foss-2023a.lua` `Pango/1.50.14-GCCcore-12.3.0.lua` `ParaView/5.11.2-foss-2023a.lua` `SCOTCH/7.0.3-gompi-2023a.lua` `SDL2/2.28.2-GCCcore-12.3.0.lua` `x264/20230226-GCCcore-12.3.0.lua` `x265/3.5-GCCcore-12.3.0.lua` `Yasm/1.3.0-GCCcore-12.3.0.lua` software under 2023.06/software/linux/x86_64/amd/zen3/software `Boost/1.82.0-GCC-12.3.0` `CGAL/5.6-GCCcore-12.3.0` `FFmpeg/6.0-GCCcore-12.3.0` `ffnvcodec/12.0.16.0` `FriBidi/1.0.12-GCCcore-12.3.0` `gnuplot/5.4.8-GCCcore-12.3.0` `LAME/3.100-GCCcore-12.3.0` `libcerf/2.3-GCCcore-12.3.0` `libgd/2.3.3-GCCcore-12.3.0` `Lua/5.4.6-GCCcore-12.3.0` `METIS/5.1.0-GCCcore-12.3.0` `netCDF/4.9.2-gompi-2023a` `OpenFOAM/10-foss-2023a` `Pango/1.50.14-GCCcore-12.3.0` `ParaView/5.11.2-foss-2023a` `SCOTCH/7.0.3-gompi-2023a` `SDL2/2.28.2-GCCcore-12.3.0` `x264/20230226-GCCcore-12.3.0` `x265/3.5-GCCcore-12.3.0` `Yasm/1.3.0-GCCcore-12.3.0` other under 2023.06/software/linux/x86_64/amd/zen3 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Dec 01 13:06:48 UTC 2023	test result	(no tests yet)

Neves-P · 2023-12-01T11:09:49Z

@Neves-P Looks like this is having the same issue with gnuplot as @boegel encountered here: #380 (comment). This was fixed in easybuilders/easybuild-easyconfigs#19261, so we need to add gnuplot explicitly here with from-pr.

Done, let's see how far we get now

Neves-P · 2023-12-01T13:57:49Z

zen3 build worked! Let's see if the timeout still occurs in neoverse_v1

Neves-P · 2023-12-01T13:57:52Z

bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1

eessi-bot-aws · 2023-12-01T13:57:55Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from Neves-P
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:
- submitted job 1620, for details & status see {2023.06}[foss/2023a] OpenFOAM v10 #404 (comment)

…eessi.io

casparvl · 2024-03-26T16:10:26Z

bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1

eessi-bot-aws · 2024-03-26T16:10:30Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from casparvl
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:
- submitted job 8595, for details & status see {2023.06}[foss/2023a] OpenFOAM v10 #404 (comment)

eessi-bot-aws · 2024-03-26T16:10:34Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_v1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_404/8595

date	job status	comment
Mar 26 16:10:32 UTC 2024	submitted	job id `8595` awaits release by job manager
Mar 26 16:10:53 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 26 16:15:56 UTC 2024	running	job `8595` is running
Mar 26 16:55:10 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-8595.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_v1-1711471956.tar.gz` size: 331 MiB (347633450 bytes) entries: 37927 modules under 2023.06/software/linux/aarch64/neoverse_v1/modules/all `OpenFOAM/10-foss-2023a.lua` software under 2023.06/software/linux/aarch64/neoverse_v1/software `OpenFOAM/10-foss-2023a` other under 2023.06/software/linux/aarch64/neoverse_v1 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Mar 26 16:55:10 UTC 2024	test result	(no tests yet)

easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.8.2-2023a.yml

Neves-P · 2024-03-26T18:21:39Z

bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1

eessi-bot-aws · 2024-03-26T18:21:42Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from Neves-P
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1

eessi-bot-aws · 2024-03-26T18:21:45Z

error: patch failed: easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.0-2023a.yml:29 error: easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.0-2023a.yml: patch does not apply Unable to download or merge changes between the source branch and the destination branch.Tip: This can usually be resolved by syncing your branch and resolving any merge conflicts.

Neves-P · 2024-03-26T18:23:43Z

error: patch failed: easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.0-2023a.yml:29 error: easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.0-2023a.yml: patch does not apply Unable to download or merge changes between the source branch and the destination branch.Tip: This can usually be resolved by syncing your branch and resolving any merge conflicts.

Good to see this work in the wild, but I really need to add some line breaks there...

Neves-P · 2024-03-26T18:23:46Z

bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1

eessi-bot-aws · 2024-03-26T18:23:49Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from Neves-P
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:
- submitted job 8620, for details & status see {2023.06}[foss/2023a] OpenFOAM v10 #404 (comment)

eessi-bot-aws · 2024-03-26T18:23:52Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_v1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_404/8620

date	job status	comment
Mar 26 18:23:52 UTC 2024	submitted	job id `8620` awaits release by job manager
Mar 26 18:24:42 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 26 18:27:12 UTC 2024	running	job `8620` is running
Mar 26 19:05:49 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-8620.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_v1-1711479775.tar.gz` size: 331 MiB (347645586 bytes) entries: 37927 modules under 2023.06/software/linux/aarch64/neoverse_v1/modules/all `OpenFOAM/10-foss-2023a.lua` software under 2023.06/software/linux/aarch64/neoverse_v1/software `OpenFOAM/10-foss-2023a` other under 2023.06/software/linux/aarch64/neoverse_v1 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Mar 26 19:05:49 UTC 2024	test result	(no tests yet)
Mar 26 21:34:31 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-neoverse_v1-1711479775.tar.gz` to S3 bucket succeeded

Neves-P · 2024-03-26T19:56:09Z

bot: build repo:eessi.io-2023.06-software arch:x86_64/generic
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3
bot: build repo:eessi.io-2023.06-software arch:aarch64/generic
bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1

eessi-bot-aws · 2024-03-26T19:56:11Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from Neves-P
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic
received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell from Neves-P
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell
received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512 from Neves-P
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512
received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 from Neves-P
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2
received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from Neves-P
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3
received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from Neves-P
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic
received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1 from Neves-P
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1
handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:
- submitted job 8625, for details & status see {2023.06}[foss/2023a] OpenFOAM v10 #404 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell resulted in:
- submitted job 8626, for details & status see {2023.06}[foss/2023a] OpenFOAM v10 #404 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512 resulted in:
- submitted job 8627, for details & status see {2023.06}[foss/2023a] OpenFOAM v10 #404 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 resulted in:
- submitted job 8628, for details & status see {2023.06}[foss/2023a] OpenFOAM v10 #404 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:
- submitted job 8629, for details & status see {2023.06}[foss/2023a] OpenFOAM v10 #404 (comment)
handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:
- submitted job 8630, for details & status see {2023.06}[foss/2023a] OpenFOAM v10 #404 (comment)
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1 resulted in:
- submitted job 8631, for details & status see {2023.06}[foss/2023a] OpenFOAM v10 #404 (comment)

eessi-bot-aws · 2024-03-26T19:56:15Z

New job on instance eessi-bot-mc-aws for architecture x86_64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_404/8625

date	job status	comment
Mar 26 19:56:14 UTC 2024	submitted	job id `8625` awaits release by job manager
Mar 26 19:57:20 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 26 20:04:28 UTC 2024	running	job `8625` is running
Mar 26 21:04:30 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-8625.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1711486931.tar.gz` size: 331 MiB (347460261 bytes) entries: 37927 modules under 2023.06/software/linux/x86_64/generic/modules/all `OpenFOAM/10-foss-2023a.lua` software under 2023.06/software/linux/x86_64/generic/software `OpenFOAM/10-foss-2023a` other under 2023.06/software/linux/x86_64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Mar 26 21:04:30 UTC 2024	test result	(no tests yet)
Mar 26 21:32:51 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-generic-1711486931.tar.gz` to S3 bucket succeeded

eessi-bot-aws · 2024-03-26T19:56:19Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-haswell for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_404/8626

date	job status	comment
Mar 26 19:56:18 UTC 2024	submitted	job id `8626` awaits release by job manager
Mar 26 19:57:23 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 26 20:06:03 UTC 2024	running	job `8626` is running
Mar 26 21:06:46 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-8626.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-haswell-1711487048.tar.gz` size: 338 MiB (355168402 bytes) entries: 37927 modules under 2023.06/software/linux/x86_64/intel/haswell/modules/all `OpenFOAM/10-foss-2023a.lua` software under 2023.06/software/linux/x86_64/intel/haswell/software `OpenFOAM/10-foss-2023a` other under 2023.06/software/linux/x86_64/intel/haswell `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Mar 26 21:06:46 UTC 2024	test result	(no tests yet)
Mar 26 21:33:47 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-haswell-1711487048.tar.gz` to S3 bucket succeeded

eessi-bot-aws · 2024-03-26T19:56:22Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-skylake_avx512 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_404/8627

date	job status	comment
Mar 26 19:56:22 UTC 2024	submitted	job id `8627` awaits release by job manager
Mar 26 19:57:25 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 26 20:06:09 UTC 2024	running	job `8627` is running
Mar 26 20:58:28 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-8627.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1711486598.tar.gz` size: 339 MiB (355747222 bytes) entries: 37927 modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all `OpenFOAM/10-foss-2023a.lua` software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software `OpenFOAM/10-foss-2023a` other under 2023.06/software/linux/x86_64/intel/skylake_avx512 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Mar 26 20:58:28 UTC 2024	test result	(no tests yet)
Mar 26 21:34:09 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1711486598.tar.gz` to S3 bucket succeeded

eessi-bot-aws · 2024-03-26T19:56:26Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen2 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_404/8628

date	job status	comment
Mar 26 19:56:25 UTC 2024	submitted	job id `8628` awaits release by job manager
Mar 26 19:57:14 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 26 20:02:56 UTC 2024	running	job `8628` is running
Mar 26 21:03:20 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-8628.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1711486888.tar.gz` size: 338 MiB (354862096 bytes) entries: 37927 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `OpenFOAM/10-foss-2023a.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `OpenFOAM/10-foss-2023a` other under 2023.06/software/linux/x86_64/amd/zen2 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Mar 26 21:03:20 UTC 2024	test result	(no tests yet)
Mar 26 21:33:15 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-amd-zen2-1711486888.tar.gz` to S3 bucket succeeded

eessi-bot-aws · 2024-03-26T19:56:30Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_404/8629

date	job status	comment
Mar 26 19:56:29 UTC 2024	submitted	job id `8629` awaits release by job manager
Mar 26 19:57:17 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 26 20:04:24 UTC 2024	running	job `8629` is running
Mar 26 20:50:56 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-8629.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen3-1711486148.tar.gz` size: 338 MiB (354814423 bytes) entries: 37927 modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all `OpenFOAM/10-foss-2023a.lua` software under 2023.06/software/linux/x86_64/amd/zen3/software `OpenFOAM/10-foss-2023a` other under 2023.06/software/linux/x86_64/amd/zen3 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Mar 26 20:50:56 UTC 2024	test result	(no tests yet)
Mar 26 21:31:37 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-amd-zen3-1711486148.tar.gz` to S3 bucket succeeded

eessi-bot-aws · 2024-03-26T19:56:33Z

New job on instance eessi-bot-mc-aws for architecture aarch64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_404/8630

date	job status	comment
Mar 26 19:56:32 UTC 2024	submitted	job id `8630` awaits release by job manager
Mar 26 19:57:08 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 26 20:02:41 UTC 2024	running	job `8630` is running
Mar 26 20:54:48 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-8630.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1711486325.tar.gz` size: 329 MiB (346024410 bytes) entries: 37927 modules under 2023.06/software/linux/aarch64/generic/modules/all `OpenFOAM/10-foss-2023a.lua` software under 2023.06/software/linux/aarch64/generic/software `OpenFOAM/10-foss-2023a` other under 2023.06/software/linux/aarch64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Mar 26 20:54:48 UTC 2024	test result	(no tests yet)
Mar 26 21:32:07 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-generic-1711486325.tar.gz` to S3 bucket succeeded

eessi-bot-aws · 2024-03-26T19:56:36Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_n1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_404/8631

date	job status	comment
Mar 26 19:56:36 UTC 2024	submitted	job id `8631` awaits release by job manager
Mar 26 19:57:11 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 26 20:02:48 UTC 2024	running	job `8631` is running
Mar 26 20:54:49 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-8631.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_n1-1711486310.tar.gz` size: 330 MiB (346930295 bytes) entries: 37927 modules under 2023.06/software/linux/aarch64/neoverse_n1/modules/all `OpenFOAM/10-foss-2023a.lua` software under 2023.06/software/linux/aarch64/neoverse_n1/software `OpenFOAM/10-foss-2023a` other under 2023.06/software/linux/aarch64/neoverse_n1 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Mar 26 20:54:49 UTC 2024	test result	(no tests yet)
Mar 26 21:32:29 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-neoverse_n1-1711486310.tar.gz` to S3 bucket succeeded

….21.0-gompi/2023b {2023.06}[gompi/2023b] Valgrind V3.21.0

{2023.06}[foss/2023a] OpenFOAM v10

ab2c260

Neves-P added the 2023.06-software.eessi.io 2023.06 version of software.eessi.io label Nov 29, 2023

boegel reviewed Nov 29, 2023

View reviewed changes

easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.8.2-2023a.yml Outdated Show resolved Hide resolved

Merge branch '2023.06-software.eessi.io' into 2023.06-software.eessi.io

b3bd046

Neves-P mentioned this pull request Nov 29, 2023

{2023.06}[foss/2023a] Qt5 v5.15.10 #406

Merged

Neves-P marked this pull request as draft November 29, 2023 13:38

Neves-P mentioned this pull request Nov 29, 2023

{2023.06}[2023a] X11 20230603 #405

Merged

Merge branch '2023.06-software.eessi.io' into 2023.06-software.eessi.io

0a8d8a7

Neves-P self-assigned this Dec 1, 2023

Neves-P marked this pull request as ready for review December 1, 2023 09:56

Include gnuplot fix from PR easybuilders/easyconfigs#19261

3439e8b

Neves-P and others added 2 commits February 26, 2024 09:33

Merge branch 'EESSI:2023.06-software.eessi.io' into 2023.06-software.…

75d3e82

…eessi.io

remove OpenMPI, which has been rebuilt in EESSI#488

f2844fb

casparvl reviewed Mar 26, 2024

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easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.8.2-2023a.yml Outdated Show resolved Hide resolved

casparvl reviewed Mar 26, 2024

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easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.8.2-2023a.yml Outdated Show resolved Hide resolved

Don't need gnuplot, install with EasyBuild 4.9.0

5a43f9e

Merge branch '2023.06-software.eessi.io' into 2023.06-software.eessi.io

7b0cf22

bedroge approved these changes Mar 26, 2024

View reviewed changes

bedroge added the bot:deploy Ask bot to deploy missing software installations to EESSI label Mar 26, 2024

bedroge merged commit cd5ff57 into EESSI:2023.06-software.eessi.io Mar 26, 2024
33 checks passed

trz42 mentioned this pull request Apr 5, 2024

Syncing code-base and CVMFS repository with EESSI (April 2024) NorESSI/software-layer#294

Open

51 tasks

TopRichard added a commit to TopRichard/bot-software-layer1 that referenced this pull request Jun 17, 2024

Merge pull request EESSI#404 from TopRichard/nessi-2023.06-Valgrind/3…

e53ada5

….21.0-gompi/2023b {2023.06}[gompi/2023b] Valgrind V3.21.0

{2023.06}[foss/2023a] OpenFOAM v10 #404

{2023.06}[foss/2023a] OpenFOAM v10 #404

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