{2023.06}[gompi/2023a] netCDF 4.9.2 #431

Neves-P · 2023-12-19T11:04:10Z

First installing netCDF v4.9.2 as a necessary dependency of #404

1 out of 30 required modules missing:

* netCDF/4.9.2-gompi-2023a (netCDF-4.9.2-gompi-2023a.eb)

eessi-bot · 2023-12-19T11:04:14Z

Instance eessi-bot-mc-aws is configured to build:

arch x86_64/generic for repo eessi-hpc.org-2023.06-compat
arch x86_64/generic for repo eessi-hpc.org-2023.06-software
arch x86_64/generic for repo eessi.io-2023.06-compat
arch x86_64/generic for repo eessi.io-2023.06-software
arch x86_64/intel/haswell for repo eessi-hpc.org-2023.06-compat
arch x86_64/intel/haswell for repo eessi-hpc.org-2023.06-software
arch x86_64/intel/haswell for repo eessi.io-2023.06-compat
arch x86_64/intel/haswell for repo eessi.io-2023.06-software
arch x86_64/intel/skylake_avx512 for repo eessi-hpc.org-2023.06-compat
arch x86_64/intel/skylake_avx512 for repo eessi-hpc.org-2023.06-software
arch x86_64/intel/skylake_avx512 for repo eessi.io-2023.06-compat
arch x86_64/intel/skylake_avx512 for repo eessi.io-2023.06-software
arch x86_64/amd/zen2 for repo eessi-hpc.org-2023.06-compat
arch x86_64/amd/zen2 for repo eessi-hpc.org-2023.06-software
arch x86_64/amd/zen2 for repo eessi.io-2023.06-compat
arch x86_64/amd/zen2 for repo eessi.io-2023.06-software
arch x86_64/amd/zen3 for repo eessi-hpc.org-2023.06-compat
arch x86_64/amd/zen3 for repo eessi-hpc.org-2023.06-software
arch x86_64/amd/zen3 for repo eessi.io-2023.06-compat
arch x86_64/amd/zen3 for repo eessi.io-2023.06-software
arch aarch64/generic for repo eessi-hpc.org-2023.06-compat
arch aarch64/generic for repo eessi-hpc.org-2023.06-software
arch aarch64/generic for repo eessi.io-2023.06-compat
arch aarch64/generic for repo eessi.io-2023.06-software
arch aarch64/neoverse_n1 for repo eessi-hpc.org-2023.06-compat
arch aarch64/neoverse_n1 for repo eessi-hpc.org-2023.06-software
arch aarch64/neoverse_n1 for repo eessi.io-2023.06-compat
arch aarch64/neoverse_n1 for repo eessi.io-2023.06-software
arch aarch64/neoverse_v1 for repo eessi-hpc.org-2023.06-compat
arch aarch64/neoverse_v1 for repo eessi-hpc.org-2023.06-software
arch aarch64/neoverse_v1 for repo eessi.io-2023.06-compat
arch aarch64/neoverse_v1 for repo eessi.io-2023.06-software

Neves-P · 2023-12-19T11:06:19Z

bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3
bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1

eessi-bot · 2023-12-19T11:06:22Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from Neves-P
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3
received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from Neves-P
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:
- submitted job 2627, for details & status see {2023.06}[gompi/2023a] netCDF 4.9.2 #431 (comment)
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:
- submitted job 2628, for details & status see {2023.06}[gompi/2023a] netCDF 4.9.2 #431 (comment)

eessi-bot · 2023-12-19T11:06:26Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_431/2627

date	job status	comment
Dec 19 11:06:25 UTC 2023	submitted	job id `2627` awaits release by job manager
Dec 19 11:06:57 UTC 2023	released	job awaits launch by Slurm scheduler
Dec 19 11:12:38 UTC 2023	running	job `2627` is running
Dec 19 11:24:39 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-2627.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen3-1702985010.tar.gz` size: 1 MiB (2077606 bytes) entries: 60 modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all `netCDF/4.9.2-gompi-2023a.lua` software under 2023.06/software/linux/x86_64/amd/zen3/software `netCDF/4.9.2-gompi-2023a` other under 2023.06/software/linux/x86_64/amd/zen3 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Dec 19 11:24:39 UTC 2023	test result	(no tests yet)
Dec 19 13:03:22 UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-amd-zen3-1702985010.tar.gz` to S3 bucket succeeded

eessi-bot · 2023-12-19T11:06:31Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_v1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_431/2628

date	job status	comment
Dec 19 11:06:30 UTC 2023	submitted	job id `2628` awaits release by job manager
Dec 19 11:06:56 UTC 2023	released	job awaits launch by Slurm scheduler
Dec 19 11:12:35 UTC 2023	running	job `2628` is running
Dec 19 11:21:33 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-2628.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_v1-1702984833.tar.gz` size: 1 MiB (1912555 bytes) entries: 60 modules under 2023.06/software/linux/aarch64/neoverse_v1/modules/all `netCDF/4.9.2-gompi-2023a.lua` software under 2023.06/software/linux/aarch64/neoverse_v1/software `netCDF/4.9.2-gompi-2023a` other under 2023.06/software/linux/aarch64/neoverse_v1 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Dec 19 11:21:33 UTC 2023	test result	(no tests yet)
Dec 19 13:03:41 UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-neoverse_v1-1702984833.tar.gz` to S3 bucket succeeded

Neves-P · 2023-12-19T11:36:56Z

bot: build repo:eessi.io-2023.06-software arch:x86_64/generic
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2
bot: build repo:eessi.io-2023.06-software arch:aarch64/generic
bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1

eessi-bot · 2023-12-19T11:36:58Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from Neves-P
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic
received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell from Neves-P
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell
received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512 from Neves-P
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512
received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 from Neves-P
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2
received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from Neves-P
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic
received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1 from Neves-P
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1
handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:
- submitted job 2629, for details & status see {2023.06}[gompi/2023a] netCDF 4.9.2 #431 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell resulted in:
- submitted job 2630, for details & status see {2023.06}[gompi/2023a] netCDF 4.9.2 #431 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512 resulted in:
- submitted job 2631, for details & status see {2023.06}[gompi/2023a] netCDF 4.9.2 #431 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 resulted in:
- submitted job 2632, for details & status see {2023.06}[gompi/2023a] netCDF 4.9.2 #431 (comment)
handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:
- submitted job 2633, for details & status see {2023.06}[gompi/2023a] netCDF 4.9.2 #431 (comment)
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1 resulted in:
- submitted job 2634, for details & status see {2023.06}[gompi/2023a] netCDF 4.9.2 #431 (comment)

eessi-bot · 2023-12-19T11:37:03Z

New job on instance eessi-bot-mc-aws for architecture x86_64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_431/2629

date	job status	comment
Dec 19 11:37:02 UTC 2023	submitted	job id `2629` awaits release by job manager
Dec 19 11:37:49 UTC 2023	released	job awaits launch by Slurm scheduler
Dec 19 11:39:01 UTC 2023	running	job `2629` is running
Dec 19 11:53:16 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-2629.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1702986763.tar.gz` size: 1 MiB (1981359 bytes) entries: 60 modules under 2023.06/software/linux/x86_64/generic/modules/all `netCDF/4.9.2-gompi-2023a.lua` software under 2023.06/software/linux/x86_64/generic/software `netCDF/4.9.2-gompi-2023a` other under 2023.06/software/linux/x86_64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Dec 19 11:53:16 UTC 2023	test result	(no tests yet)
Dec 19 13:04:01 UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-generic-1702986763.tar.gz` to S3 bucket succeeded

eessi-bot · 2023-12-19T11:37:07Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-haswell for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_431/2630

date	job status	comment
Dec 19 11:37:06 UTC 2023	submitted	job id `2630` awaits release by job manager
Dec 19 11:37:51 UTC 2023	released	job awaits launch by Slurm scheduler
Dec 19 11:39:02 UTC 2023	running	job `2630` is running
Dec 19 11:53:18 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-2630.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-haswell-1702986766.tar.gz` size: 1 MiB (2071514 bytes) entries: 60 modules under 2023.06/software/linux/x86_64/intel/haswell/modules/all `netCDF/4.9.2-gompi-2023a.lua` software under 2023.06/software/linux/x86_64/intel/haswell/software `netCDF/4.9.2-gompi-2023a` other under 2023.06/software/linux/x86_64/intel/haswell `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Dec 19 11:53:18 UTC 2023	test result	(no tests yet)
Dec 19 13:04:21 UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-haswell-1702986766.tar.gz` to S3 bucket succeeded

eessi-bot · 2023-12-19T11:37:11Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-skylake_avx512 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_431/2631

date	job status	comment
Dec 19 11:37:10 UTC 2023	submitted	job id `2631` awaits release by job manager
Dec 19 11:37:53 UTC 2023	released	job awaits launch by Slurm scheduler
Dec 19 11:39:04 UTC 2023	running	job `2631` is running
Dec 19 11:53:20 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-2631.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1702986707.tar.gz` size: 1 MiB (2089360 bytes) entries: 60 modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all `netCDF/4.9.2-gompi-2023a.lua` software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software `netCDF/4.9.2-gompi-2023a` other under 2023.06/software/linux/x86_64/intel/skylake_avx512 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Dec 19 11:53:20 UTC 2023	test result	(no tests yet)
Dec 19 13:04:41 UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1702986707.tar.gz` to S3 bucket succeeded

eessi-bot · 2023-12-19T11:37:15Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen2 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_431/2632

date	job status	comment
Dec 19 11:37:14 UTC 2023	submitted	job id `2632` awaits release by job manager
Dec 19 11:37:47 UTC 2023	released	job awaits launch by Slurm scheduler
Dec 19 11:38:59 UTC 2023	running	job `2632` is running
Dec 19 11:53:15 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-2632.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1702986723.tar.gz` size: 1 MiB (2072842 bytes) entries: 60 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `netCDF/4.9.2-gompi-2023a.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `netCDF/4.9.2-gompi-2023a` other under 2023.06/software/linux/x86_64/amd/zen2 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Dec 19 11:53:15 UTC 2023	test result	(no tests yet)
Dec 19 13:05:01 UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-amd-zen2-1702986723.tar.gz` to S3 bucket succeeded

eessi-bot · 2023-12-19T11:37:19Z

New job on instance eessi-bot-mc-aws for architecture aarch64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_431/2633

date	job status	comment
Dec 19 11:37:18 UTC 2023	submitted	job id `2633` awaits release by job manager
Dec 19 11:37:43 UTC 2023	released	job awaits launch by Slurm scheduler
Dec 19 11:38:55 UTC 2023	running	job `2633` is running
Dec 19 11:50:00 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-2633.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1702986550.tar.gz` size: 1 MiB (1915027 bytes) entries: 60 modules under 2023.06/software/linux/aarch64/generic/modules/all `netCDF/4.9.2-gompi-2023a.lua` software under 2023.06/software/linux/aarch64/generic/software `netCDF/4.9.2-gompi-2023a` other under 2023.06/software/linux/aarch64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Dec 19 11:50:00 UTC 2023	test result	(no tests yet)
Dec 19 13:05:22 UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-generic-1702986550.tar.gz` to S3 bucket succeeded

eessi-bot · 2023-12-19T11:37:22Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_n1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_431/2634

date	job status	comment
Dec 19 11:37:21 UTC 2023	submitted	job id `2634` awaits release by job manager
Dec 19 11:37:45 UTC 2023	released	job awaits launch by Slurm scheduler
Dec 19 11:38:57 UTC 2023	running	job `2634` is running
Dec 19 11:50:01 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-2634.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_n1-1702986560.tar.gz` size: 1 MiB (1927429 bytes) entries: 60 modules under 2023.06/software/linux/aarch64/neoverse_n1/modules/all `netCDF/4.9.2-gompi-2023a.lua` software under 2023.06/software/linux/aarch64/neoverse_n1/software `netCDF/4.9.2-gompi-2023a` other under 2023.06/software/linux/aarch64/neoverse_n1 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Dec 19 11:50:01 UTC 2023	test result	(no tests yet)
Dec 19 13:05:42 UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-neoverse_n1-1702986560.tar.gz` to S3 bucket succeeded

Neves-P · 2023-12-19T11:59:32Z

All builds succeeded!

Neves-P · 2023-12-19T12:12:14Z

On second thought, how did neoverse_v1 work without the hook?

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_v1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_431/2628
date job status comment
Dec 19 11:06:30 UTC 2023 submitted job id 2628 awaits release by job manager
Dec 19 11:06:56 UTC 2023 released job awaits launch by Slurm scheduler
Dec 19 11:12:35 UTC 2023 running job 2628 is running
Dec 19 11:21:33 UTC 2023 finished
😁 SUCCESS (click triangle for details)
Dec 19 11:21:33 UTC 2023 test result (no tests yet)

I forgot to add the hook that skips netCDF tests on neoverse_v1, which was causing the builds to fail in #404, but now the same thing works without skipping tests? 😵

ocaisa · 2023-12-19T12:18:52Z

Who knows, it could have been some funny side effect of the overlay. IIRC it also worked (unexpectedly) in another PR...I vote we open an issue but move ahead with merging this PR...at the end of the day skipping the test won't change the installation

Neves-P · 2023-12-19T12:27:19Z

That's a very good point and I agree with merging then as is as indeed skipping tests in neoverse_v1 shouldn't change the installation 👍 To keep the information in the same place I've added a comment on the issue I opened when I made the hook in the first place #425. Happy to open a new one or change #425 if needed too.

…io-netCDF

Add netCDF-4.9.2-gompi-2023a.eb

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Neves-P mentioned this pull request Dec 19, 2023

{2023.06}[foss/2023a] OpenFOAM v10 #404

Merged

5 tasks

Neves-P added the 2023.06-software.eessi.io 2023.06 version of software.eessi.io label Dec 19, 2023

Neves-P marked this pull request as ready for review December 19, 2023 11:59

Neves-P added ready-to-deploy Mark a PR as ready to deploy and removed ready-to-deploy Mark a PR as ready to deploy labels Dec 19, 2023

Neves-P mentioned this pull request Dec 19, 2023

Skip netCDF v4.9.2 tests on ARM #425

Open

Neves-P added the ready-to-deploy Mark a PR as ready to deploy label Dec 19, 2023

bedroge added bot:deploy Ask bot to deploy missing software installations to EESSI and removed ready-to-deploy Mark a PR as ready to deploy labels Dec 19, 2023

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Merge branch '2023.06-software.eessi.io' into 2023.06-software.eessi.…

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bedroge dismissed their stale review via 64914a8 December 19, 2023 14:21

bedroge approved these changes Dec 19, 2023

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bedroge merged commit 27e96e8 into EESSI:2023.06-software.eessi.io Dec 19, 2023
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TopRichard mentioned this pull request Jan 16, 2024

{2023.06}[gompi/2023b] netCDF v4.9.2 #453

Merged

Neves-P deleted the 2023.06-software.eessi.io-netCDF branch August 7, 2024 12:46

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{2023.06}[gompi/2023a] netCDF 4.9.2 #431

{2023.06}[gompi/2023a] netCDF 4.9.2 #431

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Neves-P commented Dec 19, 2023

Neves-P commented Dec 19, 2023

ocaisa commented Dec 19, 2023

Neves-P commented Dec 19, 2023

{2023.06}[gompi/2023a] netCDF 4.9.2 #431

{2023.06}[gompi/2023a] netCDF 4.9.2 #431

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