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but I can't seem to find any step where this file was created, or any previous reference to it in the tutorial. I see a reference to orfs.bed, which the tutorial indicates is from transdecoder. Is this a typo, and the command should have passed orfs.bed to --orfs? Or is this something else? Furthermore, it looks like the text of that command got cut off in the tutorial because --blast_targets needs an argument, but it doesn't have one.
Thanks!
The text was updated successfully, but these errors were encountered:
Can you please help me understand something about the tutorial? I'm reading here:
https://mikado.readthedocs.io/en/latest/Tutorial/
and I see at the mikado serialize step there is a command which uses a file called mikado.bed:
but I can't seem to find any step where this file was created, or any previous reference to it in the tutorial. I see a reference to orfs.bed, which the tutorial indicates is from transdecoder. Is this a typo, and the command should have passed orfs.bed to --orfs? Or is this something else? Furthermore, it looks like the text of that command got cut off in the tutorial because --blast_targets needs an argument, but it doesn't have one.
Thanks!
The text was updated successfully, but these errors were encountered: