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@leepc12 leepc12 released this 25 Mar 18:41
· 29 commits to master since this release
v2.1.3
0f7e63e
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Learn about vigilant mode.

Fixed python2 shebang (issue #359)

STDERR_BACKGROUND_CONTENTS=
Traceback (most recent call last):
  File "/home/zhaosj/anaconda3/envs/encode-atac-seq-pipeline/bin/encode_task_filter.py", line 438, in <module>
    main()
  File "/home/zhaosj/anaconda3/envs/encode-atac-seq-pipeline/bin/encode_task_filter.py", line 344, in main
    args.nth, args.mem_gb, args.out_dir)
  File "/home/zhaosj/anaconda3/envs/encode-atac-seq-pipeline/bin/encode_task_filter.py", line 136, in rm_unmapped_lowq_reads_pe
    res_param=get_samtools_res_param('fixmate', nth=nth),
  File "/home/zhaosj/anaconda3/envs/encode-atac-seq-pipeline/bin/encode_lib_common.py", line 359, in run_shell_cmd
    raise Exception(err_str)
Exception: PID=44241, PGID=44241, RC=127, DURATION_SEC=0.0
STDERR=/usr/bin/env: ‘python2’: No such file or directory
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