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Missing engine in gcs configuration #180

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TarjinderSingh opened this issue Jul 20, 2022 · 1 comment
Closed

Missing engine in gcs configuration #180

TarjinderSingh opened this issue Jul 20, 2022 · 1 comment

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@TarjinderSingh
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TarjinderSingh commented Jul 20, 2022

I was running a WARP pipeline by the Broad GATK team, and I keep hitting the following error:

Could not build the path "xxx". It may refer to a filesystem not supported by this instance of Cromwell. Supported filesystems are: HTTP, MacOSXFileSystem. Failures: 
HTTP: xxx does not have an http or https scheme (IllegalArgumentException)

I dug through the different gcs backend parameters and found that the pipeline was looking for an "engine" parameter. After adding in the following snippet to backend-file, I was able to get caper and the WARP pipeline to work. Would it be possible to add the engine to caper's default configuration?

engine {
  filesystems {
    gcs {
      auth = "application-default"
      project = "daly-neale-sczmeta"
    }
    local {}
  }
}
@leepc12
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leepc12 commented Jul 26, 2022

Fixed in v2.2.2. Please re-open if the problem persists.

@leepc12 leepc12 closed this as completed Jul 26, 2022
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