v0.4.0
- Important notice
- UCSC browser web page no longer accepts long URL (where full track hub text is encoded in such URL). So instead, Croo makes another alternative link with a linked track hub txt file instead of a full track hub text. One issue is that this text file should be public. So this track hub txt file will be converted into public URL (according to parameters defined by users). e.g. being presigned on GCS.
We have replaced old localization module (Caper's CaperURI
) with a new one (Autouri's AutoURI
).
-
Deprecated parameters
--http-user
and--http-password
: Autouri automatically uses~/.netrc
file for authentication of HTTP URLs. Use~/.netrc
file.--use-gsutil-over-aws-s3
: Old module usedaws s3
CLI for S3 files andgsutil
for GCS files. This parameter is no longer needed since new model uses Python interfaces instead of CLIs.
-
Added parameters
--verbose
(-V
) and--debug
(-D
): Prints detailed logs.verbose >= INFO
,debug >= DEBUG
.--use-gsutil-for-s3
: This is different from the deprecated parameter--use-gsutil-over-aws-s3
. Old loc module usedgsutil
CLI for file transfer between GCS (gs://
) and any other. But new module optionally (controlled by this parameter) usesgsutil
only for direct file transfer between GCS and S3 (s3://
). If this flag is turned ongsutil
will be used only for such direct file transfer.
-
Bug fixes
--tmp_dir
was not checked correctly (when it's on$CWD
).--no-graph
: This has been removed, Croo will automatically check ifdot
executable exists on$PATH
. This is a bit annoying sincepip install graphviz
does not install this important executabledot
. Users can only get it with system-level installation command likesudo apt-get install graphviz
.