Assay parameter was not being set during launch. Fixed.

ENCODE-DCC · Nov 1, 2016 · 9a4f170 · 9a4f170
1 parent b285ad5
commit 9a4f170
Showing 1 changed file with 2 additions and 4 deletions.
diff --git a/dnanexus/rampage/rampageLaunch.py b/dnanexus/rampage/rampageLaunch.py
@@ -43,8 +43,7 @@ class RampageLaunch(Launch):
                 "STEPS": {
                             "rampage-align-pe": {
                                 "app":     "rampage-align-pe",
-                                # lrna_221 no assay "params":  { "library_id": "library_id", "assay_type": "assay_type", "nthreads": "nthreads" },
-                                "params":  { "library_id": "library_id", "nthreads": "nthreads" },
+                                "params":  { "library_id": "library_id", "assay_type": "assay_type", "nthreads": "nthreads" },
                                 "inputs":  { "reads1":     "reads1",
                                              "reads2":     "reads2",
                                              "star_index": "star_index" },
@@ -63,8 +62,7 @@ class RampageLaunch(Launch):
                             },
                             "rampage-peaks": {
                                 "app":     "rampage-peaks",
-                                # lrna_221 no assay "params":  { "assay_type": "assay_type", "nthreads": "nthreads" },
-                                "params":  { "nthreads": "nthreads" },
+                                "params":  { "assay_type": "assay_type", "nthreads": "nthreads" },
                                 "inputs":  { "control_bam": "control_bam", 
                                              "gene_annotation": "gene_annotation", 
                                              "chrom_sizes": "chrom_sizes",