Skip to content

ENCODE_longRNApipeline_v1.1
Compare
Choose a tag to compare
@tdreszer tdreszer released this 29 Jan 20:33
· 152 commits to master since this release
v1.1
9f76093

NOTE: This release had been tagged as ENCODE_longRNApipeline_v2.0 but is really 1.1!

This production release is of the ENCODE long-rna-seq-pipeline version 1.1 as used in https://www.encodeproject.org.
The essential change from release v1.5 is a the STAR tool version is now 2.4.0k, which fixes a problem when processing very large fastq files. Despite the major version number changing, the results of the 2.0 pipeline are expected to be identical to those of v1.5. The reason for the major revision change is that the long-rna-seq-pipeline is now stable and no significant changes are anticipated going forward.

Note:

The small-rna-seq-pipeline, also included in this repository is also substantially finished and no significant changes are anticipated going forward.
The rampage-rna-seq-pipeline is not yet stable and is not in production.

Assets 2