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@leepc12 leepc12 released this 13 Nov 21:27
· 15 commits to master since this release
v0.1.2
a68b966

New features:

  • --collapse-header: A flag to collapse header lines into a single row (using dot notation for key name hierarchy)
  • --merge-split-rows: Merge some splitted rows into a single row to prevent staggering. DO NOT DEFINE THIS FOR ENCODE PIPELINES. DEFAULT VALUES WORK WITH ENCODE PIPELINES.

IMPORTANT: Make sure that --regex-split-rule and --merge-split-rows are consistent.

IMPORTANT: There are defaults values for those two parameters and they work with ENCODE ATAC-Seq and ChIP-Seq pipelines. Output JSON file of those pipelines has a key repN and ctlM where N and M can be any integer. Whenever this key name is found, qc2tsv makes a new row but all keys not caught by repN or ctlM are merged with the rep1 row.

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