Preparations for pypi deployment

.gitignore

@@ -3,3 +3,4 @@
 *.gz
 *.idea
 *.pyc
+neurodynex.egg-info/*

.travis.yml

@@ -1,28 +1,35 @@
 language: python
 python:
-  - "2.7"
-  - "3.4"
+- '2.7'
+- '3.4'
 install:
-  - sudo apt-get update
-  - if [[ "$TRAVIS_PYTHON_VERSION" == "2.7" ]]; then
-      wget https://repo.continuum.io/miniconda/Miniconda-latest-Linux-x86_64.sh -O miniconda.sh;
-    else
-      wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh;
-    fi
-  - bash miniconda.sh -b -p $HOME/miniconda
-  - export PATH="$HOME/miniconda/bin:$PATH"
-  - hash -r
-  - conda config --set always_yes yes --set changeps1 no
-  - conda update -q conda
-  - conda info -a
-  - conda create -q -n test-environment python=$TRAVIS_PYTHON_VERSION pep8 nose
-  - source activate test-environment
-  - conda install -c brian-team brian2
-  - conda install -c brian-team matplotlib
-before_script: # needed for plotting
-  - "export DISPLAY=:99.0"
-  - "sh -e /etc/init.d/xvfb start"
-  - sleep 3 # give xvfb some time to start
+- sudo apt-get update
+- if [[ "$TRAVIS_PYTHON_VERSION" == "2.7" ]]; then wget https://repo.continuum.io/miniconda/Miniconda-latest-Linux-x86_64.sh
+  -O miniconda.sh; else wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
+  -O miniconda.sh; fi
+- bash miniconda.sh -b -p $HOME/miniconda
+- export PATH="$HOME/miniconda/bin:$PATH"
+- hash -r
+- conda config --set always_yes yes --set changeps1 no
+- conda update -q conda
+- conda info -a
+- conda create -q -n test-environment python=$TRAVIS_PYTHON_VERSION pep8 nose
+- source activate test-environment
+- conda install -c brian-team brian2
+- conda install -c brian-team matplotlib
+before_script:
+- export DISPLAY=:99.0
+- sh -e /etc/init.d/xvfb start
+- sleep 3
 script:
-  - pep8 neurodynex
-  - nosetests neurodynex --verbosity=2
+- pep8 neurodynex
+- nosetests neurodynex --verbosity=2
+deploy:
+  provider: pypi
+  user: flinz
+  password:
+    secure: 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
+  on:
+    tags: true
+    distributions: sdist bdist_wheel
+    repo: EPFL-LCN/neuronaldynamics-exercises

MANIFEST.in

@@ -0,0 +1,2 @@
+include LICENSE*
+include requirements.txt

doc/conf.py

@@ -67,10 +67,10 @@
 # |version| and |release|, also used in various other places throughout the
 # built documents.
 #
-# The short X.Y version.
-version = '0.2.0'
+from setuptools_scm import get_version
+version = get_version()
 # The full version, including alpha/beta/rc tags.
-release = '0.2.0'
+release = get_version()
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.

doc/requirements.txt

@@ -1 +1,2 @@
-mock
+mock
+setuptools_scm

neurodynex/leaky_integrate_and_fire/__init__.py

@@ -0,0 +1 @@
+__all__ = ['LIF']

requirements.txt

@@ -1,4 +1,4 @@
 matplotlib
 numpy
 scipy
-brian2
+brian2>=2.0b4

setup.cfg

@@ -0,0 +1,2 @@
+[bdist_wheel]
+universal = 1

setup.py

@@ -0,0 +1,29 @@
+from setuptools import setup, find_packages
+from pip.req import parse_requirements
+
+# get requirements from requirements.txt
+install_reqs = parse_requirements('requirements.txt')
+reqs = [str(ir.req) for ir in install_reqs]
+
+setup(
+  name = 'neurodynex',
+  packages = ['neurodynex'], # this must be the same as the name above
+  version = '0.2.0',
+  description = 'Python exercises accompanying the book Neuronal Dynamics by Wulfram Gerstner, Werner M. Kistler, Richard Naud and Liam Paninski.',
+  author = 'LCN-EPFL',
+  author_email = 'alex.seeholzer@epfl.ch',
+  url = 'https://github.com/EPFL-LCN/neuronaldynamics-exercises', # use the URL to the github repo
+  download_url = 'https://github.com/peterldowns/mypackage/tarball/0.1', # I'll explain this in a second
+  keywords = ['compneuro', 'science', 'teaching', 'neuroscience', 'brian'], # arbitrary keywords
+  classifiers = [
+    'Development Status :: 3 - Alpha',
+    'License :: OSI Approved :: GNU General Public License v2 (GPLv2)',
+    'Programming Language :: Python :: 2.7',
+    'Programming Language :: Python :: 3.4',
+    'Topic :: Scientific/Engineering :: Medical Science Apps.'
+  ],
+  use_scm_version=True,
+  setup_requires=['setuptools_scm'],
+  install_requires=reqs,
+  license='GPLv2',
+)