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* Update job script for DKRZ * Remove unused script for CLUSTER * Update esmvaltool/utils/batch-jobs/job_DKRZ-MISTRAL.sh * Update esmvaltool/utils/batch-jobs/job_DKRZ-MISTRAL.sh * Update esmvaltool/utils/batch-jobs/job_DKRZ-MISTRAL.sh * Update esmvaltool/utils/batch-jobs/job_DKRZ-MISTRAL.sh * Set environment properly
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#!/bin/bash -e | ||
############################################################################### | ||
### BATCH SCRIPT TO RUN THE ESMVALTOOL AT DKRZ MISTRAL | ||
### Author: Mattia Righi (DLR) | ||
############################################################################### | ||
#SBATCH --partition=compute | ||
#SBATCH --time=08:00:00 | ||
#SBATCH --partition=prepost | ||
#SBATCH --exclusive | ||
#SBATCH --nodes=1 | ||
#SBATCH --mem=0 | ||
#SBATCH --time=12:00:00 | ||
#SBATCH --mail-type=FAIL,END | ||
#SBATCH --account=bd0854 | ||
#SBATCH --account=XXXXXX | ||
#SBATCH --output=job_%j.out.log | ||
#SBATCH --error=job_%j.err.log | ||
############################################################################### | ||
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# Submit job with: sbatch job_DKRZ-MISTRAL.sh | ||
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# Input arguments | ||
RECIPE=recipe_perfmetrics_CMIP5.yml | ||
CONFIG=config-user.yml | ||
RECIPE= # e.g. recipe_perfmetrics_CMIP5.yml | ||
CONFIG= # e.g. config-user.yml | ||
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# Set environment | ||
CONDAPATH= # e.g. /home/soft/miniconda3/ | ||
CONDAENV= # e.g. $CONDAPATH/envs/esmvaltool/bin | ||
ESMVALPATH= # e.g. /home/ESMValTool/esmvaltool | ||
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# Changes below this line should not be required | ||
export PATH=$PATH:$CONDAPATH/bin/ | ||
source $CONDAPATH/etc/profile.d/conda.sh | ||
conda activate esmvaltool | ||
conda info --envs | ||
$CONDAENV/esmvaltool $ESMVALPATH/recipes/$RECIPE -c $ESMVALPATH/$CONFIG | ||
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esmvaltool run --config-file $CONFIG $RECIPE |
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