Separate the implementation for clinical records

.gitignore

@@ -1,2 +1,3 @@
 .idea
 .DS_Store
+node_modules

README.md

@@ -34,6 +34,11 @@
 * `queryCorrelationType`
 * `deleteSamples`
 
+Read below about `CLINICAL_READ_PERMISSION` to use these
+* `queryClinicalSampleType`
+* `queryForClinicalRecordsFromSource`
+* `queryForClinicalRecordsWithFHIRResourceType`
+
 ### Resources
 
 * The official Apple documentation for [HealthKit can be found here](https://developer.apple.com/library/ios/documentation/HealthKit/Reference/HealthKit_Framework/index.html#//apple_ref/doc/uid/TP40014707).
@@ -53,6 +58,16 @@ cordova plugin add com.telerik.plugins.healthkit --variable HEALTH_READ_PERMISSI
 ```
 `HEALTH_READ_PERMISSION` and `HEALTH_WRITE_PERMISSION` are shown when your app asks for access to data in HealthKit.
 
+If you would like to read clinical record data from the HealthKit store you will need to provide an extra variable during the plugin install.  The `CLINICAL_READ_PERMISSION` can be set to include the ability to read FHIR resources.  The value that is set here will be used in the `NSHealthClinicalHealthRecordsShareUsageDescription` key of your app's `info.plist` file.  It will be shown when your app asks for clinical record data from HealthKit.  Do not include the `CLINICAL_READ_PERMISSION` variable unless you really need access to the clinical record data otherwise Apple may reject your app.
+
+The `Health Records` capability will be enabled if the `CLINICAL_READ_PERMISSION` is provided.
+
+Here is an install example with `CLINICAL_READ_PERMISSION` -
+```bash
+cordova plugin add com.telerik.plugins.healthkit --variable HEALTH_READ_PERMISSION='App needs read access' --variable HEALTH_WRITE_PERMISSION='App needs write access' --variable CLINICAL_READ_PERMISSION='App needs read access' --save
+```
+
+
 #### Using PhoneGap Build?
 
 ```xml
@@ -76,7 +91,7 @@ PhoneGap Build has [recently migrated](https://blog.phonegap.com/phonegap-7-0-1-
     <plugin name="com.telerik.plugins.healthkit" spec="^0.5.5" >
         <variable name="HEALTH_READ_PERMISSION" value="App needs read access" />
         <variable name="HEALTH_WRITE_PERMISSION" value="App needs write access" />
-    </plugin>        
+    </plugin>
 </platform>
 ```
 

demo/index.html

@@ -124,6 +124,16 @@ <h1>Apache Cordova</h1>
       'HKQuantityTypeIdentifierDietaryFatTotal'
     ];
 
+    // or any of these HKClinicalType for readTypes 
+    // use these to access health records (read only)
+    // HKClinicalTypeIdentifierAllergyRecord
+    // HKClinicalTypeIdentifierConditionRecord
+    // HKClinicalTypeIdentifierImmunizationRecord
+    // HKClinicalTypeIdentifierLabResultRecord
+    // HKClinicalTypeIdentifierMedicationRecord
+    // HKClinicalTypeIdentifierProcedureRecord
+    // HKClinicalTypeIdentifierVitalSignRecord
+
     window.plugins.healthkit.requestAuthorization(
         {
           readTypes: supportedTypes,
@@ -283,6 +293,77 @@ <h1>Apache Cordova</h1>
     );
   }
 
+  // used to query a specified clinical sample type
+  function queryClinicalSampleType() {
+    window.plugins.healthkit.queryClinicalSampleType(
+      {
+        'startDate': new Date(new Date().getTime() - 365 * 24 * 60 * 60 * 1000), // 365 days ago
+        'endDate': new Date(), // now
+        'sampleType': 'HKClinicalTypeIdentifierAllergyRecord',
+        // or any of these other HKClinicalType
+        // HKClinicalTypeIdentifierConditionRecord
+        // HKClinicalTypeIdentifierImmunizationRecord
+        // HKClinicalTypeIdentifierLabResultRecord
+        // HKClinicalTypeIdentifierMedicationRecord
+        // HKClinicalTypeIdentifierProcedureRecord
+        // HKClinicalTypeIdentifierVitalSignRecord
+      },
+      callback,
+      callback
+    );
+  }
+
+  // this is used to search for a specific FHIR resource type
+  // it uses predicateForClinicalRecordsWithFHIRResourceType (https://developer.apple.com/documentation/healthkit/hkquery/2999414-predicateforclinicalrecordswithf?language=objc)
+  // In most cases, there’s a one-to-one correspondance between the clinical record types and the FHIR resource types; 
+  // therefore, most queries already return samples from a single FHIR resource type. 
+  // However, queries for the HKClinicalTypeIdentifierMedicationRecord type can return records from the 
+  // HKFHIRResourceTypeMedicationOrder, HKFHIRResourceTypeMedicationDispense, and HKFHIRResourceTypeMedicationStatement FHIR resource types. 
+  // You can use this predicate to limit your query to one of these FHIR types.
+  function queryForClinicalRecordsWithFHIRResourceType() {
+    window.plugins.healthkit.queryForClinicalRecordsWithFHIRResourceType(
+      {
+        fhirResourceType: 'HKFHIRResourceTypeCondition',
+        sampleType: 'HKClinicalTypeIdentifierConditionRecord'
+        // or any of these other HKFHIRResourceType
+        // HKFHIRResourceTypeAllergyIntolerance',
+        // HKFHIRResourceTypeImmunization
+        // HKFHIRResourceTypeMedicationDispense
+        // HKFHIRResourceTypeMedicationOrder
+        // HKFHIRResourceTypeMedicationStatement
+        // HKFHIRResourceTypeObservation
+        // HKFHIRResourceTypeProcedure
+
+        // or any of these other HKClinicalType
+        // HKClinicalTypeIdentifierImmunizationRecord
+        // HKClinicalTypeIdentifierLabResultRecord
+        // HKClinicalTypeIdentifierMedicationRecord
+        // HKClinicalTypeIdentifierProcedureRecord
+        // HKClinicalTypeIdentifierVitalSignRecord
+      },
+      callback,
+      callback
+    );
+  }
+
+  // this is used to find a particular FHIR record
+  // it uses predicateForClinicalRecordsFromSource (https://developer.apple.com/documentation/healthkit/hkquery/2999413-predicateforclinicalrecordsfroms?language=objc)
+  function queryForClinicalRecordsFromSource() {
+    window.plugins.healthkit.queryForClinicalRecordsFromSource(
+      {
+        fhirResourceType: 'HKFHIRResourceTypeCondition',
+        sampleType: 'HKClinicalTypeIdentifierConditionRecord',
+        identifier: '42467', // the identifier of the FHIR resource
+        source: { // the provenance of this FHIR record
+          name: 'Sample Location C',
+          bundleIdentifier: 'com.apple.public.health.clinical.7D9AED77-AD3F-7801-5A65-59F537187C7D'
+        }
+      },
+      callback,
+      callback
+    );
+  }
+
 
   // this is work in progress
   function monitorSampleType() {

package.json

@@ -26,5 +26,9 @@
       "name": "cordova",
       "version": ">=3.0.0"
     }
-  ]
-}
+  ],
+  "dependencies": {
+    "elementtree": "0.1.7",
+    "xcode": "^1.0.0"
+  }
+}

plugin.xml

@@ -57,10 +57,18 @@
       <true/>
     </config-file>
 
+    <config-file target="*/Entitlements-Debug.plist" parent="com.apple.developer.healthkit.access">
+      <array/>
+    </config-file>
+
     <config-file target="*/Entitlements-Release.plist" parent="com.apple.developer.healthkit">
       <true/>
     </config-file>
 
+    <config-file target="*/Entitlements-Release.plist" parent="com.apple.developer.healthkit.access">
+      <array/>
+    </config-file>
+
     <header-file src="src/ios/WorkoutActivityConversion.h"/>
     <source-file src="src/ios/WorkoutActivityConversion.m"/>
     <header-file src="src/ios/HKHealthStore+AAPLExtensions.h"/>
@@ -69,6 +77,8 @@
     <source-file src="src/ios/HealthKit.m"/>
 
     <framework src="HealthKit.framework" weak="true" />
+
+    <hook type="after_plugin_install" src="scripts/after-plugin-install.js" />
   </platform>
 
 </plugin>

scripts/after-plugin-install.js

@@ -0,0 +1,78 @@
+module.exports = function (ctx) {
+  var isMeteorProject = ctx.opts.projectRoot.indexOf('/.meteor/') > -1;
+
+  if (ctx.cmdLine.indexOf('CLINICAL_READ_PERMISSION') < 0 && !isMeteorProject) {
+    console.log('CLINICAL_READ_PERMISSION was not provided');
+    return;
+  }
+
+  try {
+    var fs = require('fs'),
+      path = require('path'),
+      configXMLPath = path.join(ctx.opts.projectRoot, 'config.xml'),
+      et = require('elementtree'),
+      xcode = require('xcode'),
+      usageDescription;
+
+    if (isMeteorProject) {
+      var meteorProjectPath = ctx.opts.projectRoot.split('/.meteor/')[0];
+      var mobileConfigPath = path.join(meteorProjectPath, 'mobile-config.js');
+      var mobileConfigData = fs.readFileSync(mobileConfigPath, 'utf8');
+      var re = /CLINICAL_READ_PERMISSION?:\s*["|'](.*)['|"]/g;
+      var matches = re.exec(mobileConfigData);
+      if (matches && matches.length > 1) {
+        usageDescription = matches[1];
+      } else {
+        console.log('CLINICAL_READ_PERMISSION was not provided');
+        return;
+      }
+    } else {
+      usageDescription = ctx.cmdLine.split('CLINICAL_READ_PERMISSION=')[1].split('--')[0].trim();
+    }
+
+    console.log('*** Installing HealthKitClinicalRecords ***');
+    console.log('CLINICAL_READ_PERMISSION = ', usageDescription);
+
+    var configData = fs.readFileSync(configXMLPath).toString();
+    var etree = et.parse(configData);
+    var appName = etree.findtext('./name');
+    var srcPath = path.join(ctx.opts.projectRoot, 'plugins/com.telerik.plugins.healthkit/src/ios');
+    var projPath = path.join(ctx.opts.projectRoot, 'platforms/ios', appName + '.xcodeproj/project.pbxproj');
+    var xcodeProj = xcode.project(projPath);
+    xcodeProj.parseSync();
+
+    xcodeProj.addHeaderFile(path.join(srcPath, 'HealthKitClinicalRecords.h'));
+    xcodeProj.addSourceFile(path.join(srcPath, 'HealthKitClinicalRecords.m'));
+
+    fs.writeFileSync(projPath, xcodeProj.writeSync());
+
+    // enable health records
+    var tagPlatform = etree.findall('./platform[@name="ios"]');
+    if (tagPlatform.length > 0) {
+      // add CLINICAL_READ_PERMISSION text to config.xml
+      var tagEditConfig = et.Element('config-file', { target: '*-Info.plist', parent: 'NSHealthClinicalHealthRecordsShareUsageDescription' });
+      var tagString = et.Element('string');
+      tagString.text = usageDescription;
+      tagEditConfig.append(tagString);
+      tagPlatform[0].append(tagEditConfig);
+
+      // add Health Records to entitlements
+      ['*Entitlements-Debug.plist', '*Entitlements-Release.plist'].forEach(function(fileName){
+        var healthRecordCapabilityConfig = et.Element('config-file', { target: fileName, parent: 'com.apple.developer.healthkit.access'});
+        var healthRecordArray = et.Element('array');
+        var healthRecordString = et.Element('string');
+        healthRecordString.text = 'health-records';
+        healthRecordArray.append(healthRecordString);
+        healthRecordCapabilityConfig.append(healthRecordArray);
+        tagPlatform[0].append(healthRecordCapabilityConfig);
+      });
+
+      configData = etree.write({ 'indent': 4 });
+      fs.writeFileSync(configXMLPath, configData);
+    }
+
+    console.log('*** DONE Installing HealthKitClinicalRecords ***');
+  } catch(e) {
+    console.log('healthkit after-plugin-install error, e: ', JSON.stringify(e, null, 2));
+  }
+};