Try fixing the channels #285
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| name: PR Test | |
| on: push | |
| jobs: | |
| run-tests: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest] #, macos-latest, windows-latest] | |
| env: | |
| OS: ${{ matrix.os }} | |
| PYTHON: '3.9' | |
| steps: | |
| - name: Cancel Workflow Action | |
| uses: styfle/cancel-workflow-action@0.6.0 | |
| with: | |
| access_token: ${{ github.token }} | |
| - name: Checkout | |
| uses: actions/checkout@v2 | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.9 | |
| - name: Set up conda environment | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| mamba-version: "*" | |
| channels: conda-forge, franklab, edeno, defaults | |
| channel-priority: true | |
| activate-environment: replay_trajectory_classification | |
| environment-file: environment.yml | |
| - name: Install replay_trajectory_classification | |
| shell: bash -l {0} | |
| run: | | |
| pip install -e . | |
| - name: Test notebooks | |
| shell: bash -l {0} | |
| run: | | |
| jupyter nbconvert --to notebook --ExecutePreprocessor.kernel_name=python3 --execute notebooks/tutorial/01-Introduction_and_Data_Format.ipynb | |
| jupyter nbconvert --to notebook --ExecutePreprocessor.kernel_name=python3 --execute notebooks/tutorial/02-Decoding_with_Sorted_Spikes.ipynb | |
| jupyter nbconvert --to notebook --ExecutePreprocessor.kernel_name=python3 --execute notebooks/tutorial/03-Decoding_with_Clusterless_Spikes.ipynb | |
| jupyter nbconvert --to notebook --ExecutePreprocessor.kernel_name=python3 --execute notebooks/tutorial/04-Classifying_with_Sorted_Spikes.ipynb | |
| jupyter nbconvert --to notebook --ExecutePreprocessor.kernel_name=python3 --execute notebooks/tutorial/05-Classifying_with_Clusterless_Spikes.ipynb |