Add back in packages in conda forge #293
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: PR Test | |
| on: push | |
| jobs: | |
| run-tests: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest] #, macos-latest, windows-latest] | |
| env: | |
| OS: ${{ matrix.os }} | |
| PYTHON: '3.9' | |
| steps: | |
| - name: Cancel Workflow Action | |
| uses: styfle/cancel-workflow-action@0.6.0 | |
| with: | |
| access_token: ${{ github.token }} | |
| - name: Checkout | |
| uses: actions/checkout@v2 | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.9 | |
| - name: Set up conda environment | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| miniforge-version: latest | |
| use-mamba: true | |
| channels: conda-forge,franklab,edeno,defaults | |
| channel-priority: true | |
| activate-environment: replay_trajectory_classification | |
| environment-file: environment.yml | |
| - name: Install replay_trajectory_classification | |
| shell: bash -l {0} | |
| run: | | |
| pip install -e . | |
| - name: Test notebooks | |
| shell: bash -l {0} | |
| run: | | |
| jupyter nbconvert --to notebook --ExecutePreprocessor.kernel_name=python3 --execute notebooks/tutorial/01-Introduction_and_Data_Format.ipynb | |
| jupyter nbconvert --to notebook --ExecutePreprocessor.kernel_name=python3 --execute notebooks/tutorial/02-Decoding_with_Sorted_Spikes.ipynb | |
| jupyter nbconvert --to notebook --ExecutePreprocessor.kernel_name=python3 --execute notebooks/tutorial/03-Decoding_with_Clusterless_Spikes.ipynb | |
| jupyter nbconvert --to notebook --ExecutePreprocessor.kernel_name=python3 --execute notebooks/tutorial/04-Classifying_with_Sorted_Spikes.ipynb | |
| jupyter nbconvert --to notebook --ExecutePreprocessor.kernel_name=python3 --execute notebooks/tutorial/05-Classifying_with_Clusterless_Spikes.ipynb |