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A collection of useful R-scripts

GSDTS

GSDTS tests a list of values x against a larger universe y of values (x < y) by sub-sampling z-times a list of length of x out of the universe. Each sub-sampled list is checked against the already created lists to ensure unique lists to satisfy “sub-sampling without replacement”. The user needs to provide the lists x and y as well as the number of sub-sampling repeats z. As result the sum, mean or median of all sub-sampling results are plotted as histogram and the respective sum, mean or median of list x is then indicated by a red bar in this histogram.

Run GSDTS with random lists

Here we just create a universe with 10.000 random values and test a list of 128 random values against it:

big_list<- rnorm(10000)

small_list <- rnorm(128)

GSDTS(128,1000,big_list,small_list)

GSDTS output

If you use this script in your research please cite: S. Terlecki-Zaniewicz, T. Humer, T. Eder, J. Schmöllerl, E. Heyes, G. Manhart, N. Kuchynka, K. Parapatics, F. Liberante, A. Müller, F. Grebien; Biomolecular Condensation of NUP98-Fusion Proteins Drives Leukemogenic Gene Expression. Nat. Struct. Mol. Biol. in press

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Useful R-scripts by edert

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