MICRONOTA

micronota is an open-source, BSD-licensed package to annotate microbial genomes and metagenomes.

As Python 3 matures and majority python packages support Python 3, the scientific Python community is in favor of dropping Python 2 compatibility. Thus, micronota will only support Python 3. This will allow micronota to have few dependency and avoid maintenance of Python 2 legacy code.

Installing

To install the latest release of micronota:

pip install micronota

Running commands

To print the configuration, database and external annotation tools:

micronota --info

Getting help

To get help with micronota, you should use the micronota tag on Biostars. The developers regularly monitor the micronota tag on Biostars.

Developing

If you're interested in getting involved in micronota development, see CONTRIBUTING.md.

See the list of micronota's contributors.

Licensing

micronota is available under the new BSD license. See COPYING.txt for micronota's license, and the licenses directory for the licenses of third-party software that is (either partially or entirely) distributed with micronota.

Dependencies

prodigal

infernal

HMMER

Diamond