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index.psp
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index.psp
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<%
#!/usr/bin/env python
__author__ = "Doug Wendel"
__copyright__ = "Copyright 2010, Qiime Web Analysis"
__credits__ = ["Doug Wendel", "Emily TerAvest"]
__license__ = "GPL"
__version__ = "1.0.0.dev"
__maintainer__ = ["Doug Wendel"]
__email__ = "wendel@colorado.edu"
__status__ = "Development"
from data_access_connections import data_access_factory
from enums import ServerConfig,DataAccessType
import os
from enums import FieldGrouping
from qiime.parse import parse_mapping_file
tiny_markers = False
portal_type = 'americangut'
# Data Access
data_access = data_access_factory(ServerConfig.data_access_type)
ag_data_access = data_access_factory(ServerConfig.data_access_type, 'american_gut')
# Session variables
sess = Session.Session(req)
if 'username' in sess:
psp.redirect('logout.psp')
sess['portal_type'] = portal_type
sess['document_root'] = req.document_root() + '/americangut/'
sess['resources'] = {}
sess['resources']['barcode_images_fp'] = os.path.join('img', 'barcodes')
sess.set_timeout(604800)
sess.save()
%>
<!DOCTYPE html>
<html lang="en">
<head>
<noscript>
<meta HTTP-EQUIV="REFRESH" content="0; url=nojs.html">
</noscript>
<meta charset="utf-8">
<title>American Gut</title>
<link rel="stylesheet" type="text/css" href="style/americangut.css">
<link rel="stylesheet" type="text/css" href="style/menu.css">
<script type="text/javascript" src="https://maps.googleapis.com/maps/api/js?sensor=false"></script>
<script type="text/javascript" src="/qiime/js/qiime.js"></script>
<script type="text/javascript" src="/qiime/js/jquery_validate/lib/jquery.js"></script>
<script type="text/javascript" src="/qiime/js/jquery_validate/lib/jquery.metadata.js"></script>
<script type="text/javascript" src="/qiime/js/jquery_validate/jquery.validate.js"></script>
<script type="text/javascript" src="http://code.jquery.com/jquery-latest.js"></script>
<script type="text/javascript">
$(document).ready(function(){
$("ul.subnav").parent().append("<span></span>"); //Only shows drop down trigger when js is enabled - Adds empty span tag after ul.subnav
$("ul.topnav li span").click(function() { //When trigger is clicked...
//Following events are applied to the subnav itself (moving subnav up and down)
$(this).parent().find("ul.subnav").slideDown('fast').show(); //Drop down the subnav on click
$(this).parent().hover(function() {
}, function(){
$(this).parent().find("ul.subnav").slideUp('slow'); //When the mouse hovers out of the subnav, move it back up
});
//Following events are applied to the trigger (Hover events for the trigger)
}).hover(function() {
$(this).addClass("subhover"); //On hover over, add class "subhover"
}, function(){ //On Hover Out
$(this).removeClass("subhover"); //On hover out, remove class "subhover"
});
});
function toggleSection(section_name)
{
div = document.getElementById(section_name);
header_name = section_name + '_header';
if (div.style.display == 'none')
{
$('#' + section_name).fadeIn('fast')
header_content = $('#' + header_name)[0].innerHTML
$('#' + header_name)[0].innerHTML = header_content.replace('+', '-');
window.scrollBy(0, 200);
}
else
{
$('#' + section_name).fadeOut('fast')
header_content = $('#' + header_name)[0].innerHTML
$('#' + header_name)[0].innerHTML = header_content.replace('-', '+');
}
}
function drawMap(zoom_level, position)
{
var mapOptions =
{
zoom: zoom_level,
center: position,
scrollwheel: false,
mapTypeId: google.maps.MapTypeId.TERRAIN,
mapTypeControl: false,
streetViewControl: false,
panControl: false
};
var stylez = [
{
featureType: "all",
elementType: "all",
stylers: [
{ saturation: -100 } // <-- THIS
]
}
];
var map = new google.maps.Map(document.getElementById("map_canvas"), mapOptions);
var mapType = new google.maps.StyledMapType(stylez, { name:"Grayscale" });
map.mapTypes.set('tehgrayz', mapType);
map.setMapTypeId('tehgrayz');
setMarkers(map, latlongs_db);
}
function renderLocalizedMap(position)
{
p = new google.maps.LatLng(position.coords.latitude, position.coords.longitude);
zoom_level = 10;
drawMap(zoom_level, p);
}
function renderMap()
{
p = new google.maps.LatLng(39.83, -99.89);
zoom_level = 4;
drawMap(zoom_level, p);
}
function initialize()
{
if (navigator.geolocation)
{
navigator.geolocation.getCurrentPosition(renderLocalizedMap, renderMap);
}
else
{
renderMap()
}
}
function setMarkers(map, locations)
{
for (var i = 0; i < locations.length; i++)
{
var loc = locations[i];
var myLatLng = new google.maps.LatLng(loc[1], loc[2]);
<%
if tiny_markers:
# Indent
%>
var marker = new google.maps.Marker({
position:myLatLng,
map: map,
clickable: false,
size:(10, 10),
color:"00ff00",
icon:'/qiime/img/blue_tiny.png'
});
<%
else:
# Indent
%>
var pinColor = loc[4];
var pinImage = new google.maps.MarkerImage("http://chart.apis.google.com/chart?chst=d_map_pin_icon&chld=wc-male|" + pinColor,
new google.maps.Size(21, 34),
new google.maps.Point(0,0),
new google.maps.Point(10, 34));
var pinShadow = new google.maps.MarkerImage("http://chart.apis.google.com/chart?chst=d_map_pin_shadow",
new google.maps.Size(40, 37),
new google.maps.Point(0, 0),
new google.maps.Point(12, 35));
var marker = new google.maps.Marker({
position: myLatLng,
map: map,
icon: pinImage,
shadow: pinShadow
});
<%
# End if
%>
}
}
</script>
<%
# Write out the database of points
result_list=[]
# Get the map markers
ag_data_access = data_access_factory(ServerConfig.data_access_type, 'american_gut')
# if database connection was unsuccessful, this is the first place it would
# manifest
try:
results = ag_data_access.getMapMarkers()
except:
req.write('<div class="header clearfix">\n')
req.write('<center><img id="logo" src="img/ag_logo.jpg">\n')
req.write('<br/>\n')
req.write('<br/>\n')
req.write('<br/>\n')
req.write('<br/>\n')
req.write('<br/>\n')
req.write('<br/>\n')
req.write('<br/>\n')
req.write('<br/>\n')
req.write("<h1>Sorry, we could not connect to our database. <br/> We are working hard on the issue, please check back shortly!</h1>")
req.write('</center></div>\n')
req.write('<script type="text/javascript">')
req.write('var latlongs_db = [')
for i, val in enumerate(results):
if val[0] and val[1] and val[2]:
study_alias = str(val[0]).replace("'", "\\'")
result_list.append("\n['{0}',{1},{2},{3},'{4}']".format(study_alias, val[1], val[2], str(i+1), val[3]))
req.write('%s];' % ','.join(result_list))
req.write('window.onload=initialize;</script>')
%>
</head>
<body>
<div style="width:100%; height:100%; background-color:#000;">
<div id="map_canvas" style="width:100%; height:100%; opacity:0.8;"></div>
</div>
<!-- Map key -->
<div style="position:absolute; bottom: 30px; left:50px; opacity:0.9; width:260px;">
<div class="left menuheader" style="margin-top:10px;">
<p>Map Key</p>
</div>
<div class="left keywrapper">
<ul class="key">
<li><img src="http://chart.apis.google.com/chart?chst=d_map_pin_icon&chld=wc-male|00B2FF"/> Participant</li>
<li><img src="http://chart.apis.google.com/chart?chst=d_map_pin_icon&chld=wc-male|ffff00"/> Kit Verified</li>
<li><img src="http://chart.apis.google.com/chart?chst=d_map_pin_icon&chld=wc-male|00ff00"/> Sample(s) Logged</li>
</ul>
</div>
</div>
<!-- Twitter
<div style="position:absolute; top:145px; right:50px; width:300px;">
<a class="twitter-timeline" href="https://twitter.com/americangut" data-widget-id="328928986170269696">Tweets by @americangut</a>
<script>!function(d,s,id){var js,fjs=d.getElementsByTagName(s)[0],p=/^http:/.test(d.location)?'http':'https';if(!d.getElementById(id)){js=d.createElement(s);js.id=id;js.src=p+"://platform.twitter.com/widgets.js";fjs.parentNode.insertBefore(js,fjs);}}(document,"script","twitter-wjs");</script>
</div>
-->
<!-- Header logo -->
<div class="wrapper clearfix" style="position:absolute; top:10px; left:50px; right:50px; opacity:0.9;">
<div class="header clearfix">
<img id="logo" src="img/ag_logo.jpg">
</div>
</div>
<div class="wrapper clearfix" style="position:absolute; top:130px; left:50px; opacity:0.9; width:260px;">
<br>
<div class="left menuwrapper">
<div id="cssmenu">
<ul>
<li><a href="FAQ.psp#faq0">American Gut 101</a></li>
<li><a href="https://fundrazr.com/campaigns/4Tqx5" target="_blank">Join the Project</a></li>
<li><a href="http://goo.gl/Jdh1cZ" target="_blank">Preliminary Results</a></li>
<li><a href="img/FAQ_Human_Microbiome.pdf" target="_blank">Human Microbiome FAQ</a></li>
<li class="has-sub"><a><span>Participant Resources</span></a>
<ul>
<li><a href="FAQ.psp">FAQ</a></li>
<li><a href="img/full_instructions.pdf" target="_blank">Kit Instructions</a></li>
<li><a href="international_shipping.psp?lan=en">International Shipping</a></li>
<li class="last"><a href="international_shipping.psp?lan=es">International Shipping (Español)</a></li>
</ul>
</li>
</ul>
</div>
<div id="cssmenu">
<%
# This is the location where the user directories are written
environment_vars=req.get_options()
output_dir='%s/user_data' % environment_vars['HOME']
link_path_dir = 'studies'
if form.has_key('username'):
username = form["username"]
password = form["password"]
user_data = ag_data_access.authenticateWebAppUser(username, password)
# Special AG case: if user data is None, it may be the first login from a hand-out kit. Check
# if the username/password exists in the handout list. If so, this must be the first time
# they've accessed the site and will need to fill out their user data.
if not user_data:
is_handout = ag_data_access.handoutCheck(username, password)
if is_handout == 'y':
# Indent
# Redirect to user registration screen
%>
<form action="register_user.psp" method="post" name="register_user" id="register_user">
<input type="hidden" name="username" id="username" value="<%=username%>">
<input type="hidden" name="password" id="password" value="<%=password%>">
</form>
<script>document.register_user.submit();</script>
<%
# End is_handout indent
# End user_data indent
if (user_data):
sess['user_data'] = user_data
sess['username'] = user_data['name']
sess['supplied_kit_id'] = form["username"]
sess.save()
url = 'fusebox.psp?page=portal.psp'
req.write('<script language=\"javascript\">window.location="{0}";</script>'.format(url))
else:
req.write("<p style='color:#FF0000;'>Invalid Kit ID/password.</p>")
# end
%>
<!-- Login form div -->
<div>
<h3 style="margin-left:5px;">Participant Log In</h3>
<table width="100%">
<tr width="100%">
<td width="30%"></td>
<td width="30%">
<form method="post" action="index.psp">
<table width="100%">
<tr><td>Kit ID</td><td><input type="text" id="username" name="username"></td></tr>
<tr><td>Password</td><td><input type="password" id="password" name="password"></td></tr>
<tr><td colspan="2"><input type="submit" value="Log In"></tr>
<tr><td colspan="2"><a href="mailto:americangut@gmail.com?subject=AGLOGINHELP&body=Please%20describe%20your%20problem%20and%20also%20include%20the%20last%20two%20digits%20of%20your%20Kit%20ID" class="small_link">I'm having trouble logging in...</a></td></tr>
</table>
</form>
</td>
<td width="30%"></td>
</tr>
</table>
</div>
<!-- End login form div -->
</div>
<div>
<br />
</div>
<%@ include file="footer.psp"%>