Merge 1ce85fe into 6e4c294

Ensembl · May 4, 2021 · 30626fc · 30626fc
2 parents 6e4c294 + 1ce85fe
commit 30626fc
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Showing 5 changed files with 11 additions and 7 deletions.
diff --git a/lib/Bio/EnsEMBL/DataCheck/Checks/ControlledMetaKeys.pm b/lib/Bio/EnsEMBL/DataCheck/Checks/ControlledMetaKeys.pm
@@ -29,7 +29,7 @@ extends 'Bio::EnsEMBL::DataCheck::DbCheck';
 use constant {
   NAME        => 'ControlledMetaKeys',
   DESCRIPTION => 'Meta keys are consistent with production database',
-  GROUPS      => ['core', 'corelike', 'meta', 'funcgen', 'variation'],
+  GROUPS      => ['core', 'corelike', 'funcgen', 'meta', 'meta_sample', 'variation'],
   DB_TYPES    => ['cdna', 'core', 'funcgen', 'otherfeatures', 'rnaseq', 'variation'],
   TABLES      => ['meta']
 };

diff --git a/lib/Bio/EnsEMBL/DataCheck/Checks/DisplayableSampleGene.pm b/lib/Bio/EnsEMBL/DataCheck/Checks/DisplayableSampleGene.pm
@@ -30,7 +30,7 @@ extends 'Bio::EnsEMBL::DataCheck::DbCheck';
 use constant {
   NAME        => 'DisplayableSampleGene',
   DESCRIPTION => 'Sample gene is displayable and has web_data attached to its analysis',
-  GROUPS      => ['analysis_description', 'core', 'brc4_core', 'geneset'],
+  GROUPS      => ['analysis_description', 'core', 'brc4_core', 'geneset', 'meta_sample'],
   DB_TYPES    => ['core'],
   TABLES      => ['analysis', 'analysis_description', 'gene', 'meta']
 };

diff --git a/lib/Bio/EnsEMBL/DataCheck/Checks/MetaKeyCardinality.pm b/lib/Bio/EnsEMBL/DataCheck/Checks/MetaKeyCardinality.pm
@@ -29,7 +29,7 @@ extends 'Bio::EnsEMBL::DataCheck::DbCheck';
 use constant {
   NAME        => 'MetaKeyCardinality',
   DESCRIPTION => 'A subset of meta keys must only have a single value',
-  GROUPS      => ['ancestral', 'brc4_core', 'core', 'meta'],
+  GROUPS      => ['ancestral', 'brc4_core', 'core', 'meta', 'meta_sample'],
   DB_TYPES    => ['core'],
   TABLES      => ['meta']
 };

diff --git a/lib/Bio/EnsEMBL/DataCheck/Checks/MetaKeyFormat.pm b/lib/Bio/EnsEMBL/DataCheck/Checks/MetaKeyFormat.pm
@@ -30,7 +30,7 @@ extends 'Bio::EnsEMBL::DataCheck::DbCheck';
 use constant {
   NAME        => 'MetaKeyFormat',
   DESCRIPTION => 'Meta values are correctly formatted and linked',
-  GROUPS      => ['ancestral', 'brc4_core', 'core', 'meta', 'variation'],
+  GROUPS      => ['ancestral', 'brc4_core', 'core', 'meta', 'meta_sample', 'variation'],
   DB_TYPES    => ['core', 'variation'],
   TABLES      => ['meta']
 };

diff --git a/lib/Bio/EnsEMBL/DataCheck/index.json b/lib/Bio/EnsEMBL/DataCheck/index.json
@@ -954,8 +954,9 @@
       "groups" : [
          "core",
          "corelike",
-         "meta",
          "funcgen",
+         "meta",
+         "meta_sample",
          "variation"
       ],
       "name" : "ControlledMetaKeys",
@@ -1154,7 +1155,8 @@
          "analysis_description",
          "core",
          "brc4_core",
-         "geneset"
+         "geneset",
+         "meta_sample"
       ],
       "name" : "DisplayableSampleGene",
       "package_name" : "Bio::EnsEMBL::DataCheck::Checks::DisplayableSampleGene"
@@ -1704,7 +1706,8 @@
          "ancestral",
          "brc4_core",
          "core",
-         "meta"
+         "meta",
+         "meta_sample"
       ],
       "name" : "MetaKeyCardinality",
       "package_name" : "Bio::EnsEMBL::DataCheck::Checks::MetaKeyCardinality"
@@ -1740,6 +1743,7 @@
          "brc4_core",
          "core",
          "meta",
+         "meta_sample",
          "variation"
       ],
       "name" : "MetaKeyFormat",