Method returns objects rather than synonym strings - need to call the…

… name method on the synonym objects.
Ensembl · Mar 30, 2021 · 39b2a6a · 39b2a6a
1 parent a213ea9
commit 39b2a6a
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/lib/Bio/EnsEMBL/DataCheck/Checks/PlastidsAnnotated.pm b/lib/Bio/EnsEMBL/DataCheck/Checks/PlastidsAnnotated.pm
@@ -47,7 +47,8 @@ sub skip_tests {
     my $slice = $sa->fetch_by_region('toplevel', $pt_name);
     # Need to iterate over names due to unavoidable fuzzy matching of synonyms.
     if (defined $slice && $slice->is_toplevel) {
-      my @names = ($slice->seq_region_name, @{$slice->get_all_synonyms});
+      my @synonyms = map { $_->name } @{$slice->get_all_synonyms};
+      my @names = ($slice->seq_region_name, @synonyms);
       foreach my $name (@names) {
         if (exists $pt_names{lc($name)}) {
           $pt = 1;