Merge pull request #264 from Ensembl/bugfix/remove_skeletons

Remove skeleton datachecks for unimplemented functionality.
Ensembl · Jun 22, 2020 · 76c2bc0 · 76c2bc0
2 parents 43cd4cb + 11b364b
commit 76c2bc0
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diff --git a/lib/Bio/EnsEMBL/DataCheck/Checks/DNAFragCore.pm b/lib/Bio/EnsEMBL/DataCheck/Checks/DNAFragCore.pm
diff --git a/lib/Bio/EnsEMBL/DataCheck/Checks/GenomeDBCore.pm b/lib/Bio/EnsEMBL/DataCheck/Checks/GenomeDBCore.pm
diff --git a/lib/Bio/EnsEMBL/DataCheck/index.json b/lib/Bio/EnsEMBL/DataCheck/index.json
@@ -903,15 +903,6 @@
       "name" : "DNAEmpty",
       "package_name" : "Bio::EnsEMBL::DataCheck::Checks::DNAEmpty"
    },
-   "DNAFragCore" : {
-      "datacheck_type" : "critical",
-      "description" : "Top-level sequences in the core database match dnafrags in compara database",
-      "groups" : [
-         "compara"
-      ],
-      "name" : "DNAFragCore",
-      "package_name" : "Bio::EnsEMBL::DataCheck::Checks::DNAFragCore"
-   },
    "DataFilesExist" : {
       "datacheck_type" : "critical",
       "description" : "Data files are defined where necessary, and exist on the filesystem",
@@ -1301,15 +1292,6 @@
       "name" : "GeneTreeHighlighting",
       "package_name" : "Bio::EnsEMBL::DataCheck::Checks::GeneTreeHighlighting"
    },
-   "GenomeDBCore" : {
-      "datacheck_type" : "critical",
-      "description" : "Species, assembly, and geneset metadata are the same in core and compara databases",
-      "groups" : [
-         "compara"
-      ],
-      "name" : "GenomeDBCore",
-      "package_name" : "Bio::EnsEMBL::DataCheck::Checks::GenomeDBCore"
-   },
    "GenomeStatistics" : {
       "datacheck_type" : "critical",
       "description" : "Genome statistics are present and correct",