Merge pull request #259 from Ensembl/feature/dupe_xref_advisory

Make duplicate xref check advisory
Ensembl · Jun 12, 2020 · 91084dc · 91084dc
2 parents 3e13106 + 9546fc2
commit 91084dc
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Showing 2 changed files with 2 additions and 1 deletion.
diff --git a/lib/Bio/EnsEMBL/DataCheck/Checks/DuplicateXref.pm b/lib/Bio/EnsEMBL/DataCheck/Checks/DuplicateXref.pm
@@ -31,6 +31,7 @@ use constant {
   NAME           => 'DuplicateXref',
   DESCRIPTION    => 'Xrefs have been added twice with different descriptions or versions',
   GROUPS         => ['xref', 'core'],
+  DATACHECK_TYPE => 'advisory',
   DB_TYPES       => ['core'],
   TABLES         => ['xref'],
   PER_DB         => 1,

diff --git a/lib/Bio/EnsEMBL/DataCheck/index.json b/lib/Bio/EnsEMBL/DataCheck/index.json
@@ -990,7 +990,7 @@
       "package_name" : "Bio::EnsEMBL::DataCheck::Checks::DuplicateTranscriptNames"
    },
    "DuplicateXref" : {
-      "datacheck_type" : "critical",
+      "datacheck_type" : "advisory",
       "description" : "Xrefs have been added twice with different descriptions or versions",
       "groups" : [
          "xref",